View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_18 (Length: 546)
Name: NF16091_low_18
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Complemental strand, 4068803 - 4068303
Alignment:
| Q |
15 |
atgaatattatttcttcatttattcaaaatcaaatcaactacataaaaagaacttaagttttttctgtcttcttcacatcttcaaaatcggattaca--t |
112 |
Q |
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| T |
4068803 |
atgaatattatttcttcatttattcaaaatcaaatcaactgcataaaaagaacttaagttttttctttcttcttcacatcttcaaaatcggattacacat |
4068704 |
T |
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| Q |
113 |
attttcatattttaaaagtgttgtaggattatttttcttctattttcaacactattaaaaatgcatatctctatatgtacatgagtaaacaatcattcaa |
212 |
Q |
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| T |
4068703 |
attttcatattttaaaagtgttgtaggattatttttcttctattttcaacactattaaaaatgcatatctctatatgtacatgagtaaacaatcattcaa |
4068604 |
T |
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| Q |
213 |
aatcatctatcatacaagtttgtatttgattttccaccaaatttataggagaaaacttttttcttagtctcattttgtatttagttaggcaagatacagt |
312 |
Q |
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| T |
4068603 |
aatcatctatcatacaagtttgtatttgattttccaccaaatttattggagaaaacttttttcttagtctcattttgtatttagttaggcaagatacagt |
4068504 |
T |
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| Q |
313 |
tttaagtagaagcaacaactaaaatatgcaataaacaacattttgtgtcatgattgttttggtgcattgtaattggtgttggagccttggtttgaagcca |
412 |
Q |
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| T |
4068503 |
tttaagtagaagcaacaactaaaatatgcaataaacaacattttgtgccatgattgttttggtgcattgtaattggtgttggagccttggtttgaagcca |
4068404 |
T |
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| Q |
413 |
caatgaaagcttcagaaggtggtttgtgtttttggaagcaatgcaaggtttgttagagactattaacacttgagtagcttgttaagttggtgtatctttt |
512 |
Q |
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| T |
4068403 |
aaatgaaagcttcagaaggtggtttgtgtttttggaagcaatgcaagg-ttgtta----------------gagtagcttgttaagttggtgtatctttt |
4068321 |
T |
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| Q |
513 |
gcatgttatgctagtttg |
530 |
Q |
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| T |
4068320 |
gcatgttatgctagtttg |
4068303 |
T |
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