View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_19 (Length: 544)
Name: NF16091_low_19
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_19 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 544
Target Start/End: Original strand, 36639770 - 36640305
Alignment:
| Q |
8 |
ggagaagcaaaggtgttaaatgggaccatagttacagccaaaggttgcaataatagtagtgtgtatgaagctgggacggagttcattttaccgaggccaa |
107 |
Q |
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| T |
36639770 |
ggagaaacaaaggtcttaaatggcaccatagttacagccaaaggttgcaataatagtagtgtgtatgaagctgggacggagctcattttaccgaggccaa |
36639869 |
T |
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| Q |
108 |
aaatcgatatgttgcatcacaatttctcactggaaattacatcaacactcatttgccagaaaatatgtcattctaatccagactattttcttctatttat |
207 |
Q |
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| T |
36639870 |
aaatcgatatgttgcatcacaaattctcactggaaattacatcaacactcatttgccagaaaatatgtcattctaatccagactattttcttctatttat |
36639969 |
T |
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| Q |
208 |
caaagtttgattagagttgtatgacacagtataaataataacataaacctgtttcttttgcaaatgcttttatgatttgacaattgataaaaactggaat |
307 |
Q |
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| T |
36639970 |
caaagtttgattagagttgtatgacacagtataaataataacataaacctgtttcttttgcaaatgcttttatgatttgacaattgataaaaactggaat |
36640069 |
T |
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| Q |
308 |
gtaaaaatattccaacaaacatatttggaaaatacatttacaagcc-aaaaaactctgatcttatttgtcatttttctcaaactcaattataacatgagc |
406 |
Q |
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| T |
36640070 |
gtaaaaatattccaacaaacatatttgggaaatacatttacaagccaaaaaaactctgatcttatttgttatttttctcaaactcaattataacatgagc |
36640169 |
T |
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| Q |
407 |
ttggttacaactgtgcattatacatctgaatttaaagagtgataatttggaagagagattgatctaggtatatccattatcttattttttggctacataa |
506 |
Q |
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| T |
36640170 |
ttggttacaactgtgcattatacatctgaatttaaagagtgataatttgga--agagattgatctaggtatatccattatcttattttttggctacataa |
36640267 |
T |
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| Q |
507 |
gcatagtattgtaccataggaacaacaaatgcaataac |
544 |
Q |
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| T |
36640268 |
gcatagtattgtaccataggaacaacaaatgcaataac |
36640305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 36635096 - 36635247
Alignment:
| Q |
26 |
aatgggaccatagttacagccaaaggttgcaataatagtagtgtgtatg-aagctgggacggagttcattttaccgaggccaaaaatcgatatgttgcat |
124 |
Q |
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| T |
36635096 |
aatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggcttcaaatcaatatgttgcat |
36635195 |
T |
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| Q |
125 |
cacaatttctcactggaaattacatcaacactcatttgccagaaaatatgtc |
176 |
Q |
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| T |
36635196 |
cacaaattctcaccagaaactactccaacactgatttgtcataaaagatgtc |
36635247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 36636717 - 36636780
Alignment:
| Q |
108 |
aaatcgatatgttgcatcacaatttctcactggaaattacatcaacactcatttgccagaaaat |
171 |
Q |
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| T |
36636717 |
aaatcgatatgttgcatcataaattttcaccgaaaattactccaacactcatttgtcagaaaat |
36636780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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