View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_2 (Length: 792)

Name: NF16091_low_2
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_2
NF16091_low_2
[»] chr4 (4 HSPs)
chr4 (19-780)||(54608391-54609150)
chr4 (509-576)||(37310024-37310091)
chr4 (490-560)||(39023188-39023258)
chr4 (490-560)||(45849060-45849130)
[»] chr7 (1 HSPs)
chr7 (490-567)||(48674549-48674626)
[»] chr5 (4 HSPs)
chr5 (487-564)||(10241734-10241811)
chr5 (492-567)||(10758793-10758868)
chr5 (490-560)||(11146516-11146586)
chr5 (490-564)||(19891413-19891487)
[»] chr6 (6 HSPs)
chr6 (490-564)||(7418287-7418361)
chr6 (490-560)||(7865342-7865412)
chr6 (490-560)||(9372188-9372258)
chr6 (530-567)||(15285549-15285586)
chr6 (490-567)||(29284272-29284349)
chr6 (490-555)||(30916339-30916404)
[»] chr8 (5 HSPs)
chr8 (530-560)||(8971539-8971569)
chr8 (490-564)||(13406609-13406683)
chr8 (530-564)||(36918501-36918535)
chr8 (490-567)||(10573107-10573184)
chr8 (490-555)||(24790311-24790376)
[»] chr3 (1 HSPs)
chr3 (490-564)||(53752687-53752761)
[»] chr2 (2 HSPs)
chr2 (490-564)||(17601088-17601162)
chr2 (490-555)||(27016295-27016360)
[»] chr1 (2 HSPs)
chr1 (490-564)||(3560368-3560442)
chr1 (490-564)||(15390229-15390303)


Alignment Details
Target: chr4 (Bit Score: 669; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 19 - 780
Target Start/End: Original strand, 54608391 - 54609150
Alignment:
Q  19 ttcaactgtattaaggtgtggcgaaatgatatgggttgaggcgctaaagcagttttaagatggaaatacaaaattcgatccctcgtgctaacaaattctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54608391 ttcaactgtattaaggtgtggcgaaatgatatgggttgaggcgctaaagcagttttaagatggaaatacaaaattcgatccctagtgctaacaaattctc 54608490  T
Q  119 cctccctcaatttgataaccactaacattttcttaacaaaaaattggtaaatgttcatacggtcaattgtattaaggtaagaacattaaccaacaaaaat 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54608491 cctccctcaatttgataaccactaacattttcttatcaaaaaattggtaaatgttcatacggtcaattgtattaaggtaagaacattaaccaacaaaaat 54608590  T
Q  219 atgtaataatatatttctccaatgtcgcagatcgctaatctaataaatattggtatttggtcttgatgattgaaattagtaatgacttggagatttactt 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||    
T  54608591 atgtaatgatatatttctccaatgtcgcagatcgctaatctaataaatatcggta-ttggtcttgatgattgaaattactaatgacttggagatttactt 54608689  T
Q  319 ggaagctcatatgattgatttgagagtttccaatagctattttaagttcatgttgaataagatttaaatgaaattgtcgggatggaaggacaactctctt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54608690 ggaagctcatatgattgatttgagagtttccaatagctattttaagttcatgttgaataagatttaaatgaaattgt-gggatggaaggacaactctctt 54608788  T
Q  419 tctcgtgcaagaagagtgactcttccccaatcttcacttattaatgttatctagtcatctcttatattttctggagaagtggagtttccagggtttaaac 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||     
T  54608789 tctcgtgcaagaagagtgactcttccccaatcttcacttattaatgttatctagtcatctcttatattttatggagaagtggagtctccagggttcaaat 54608888  T
Q  519 tccaaccccgtcatataatatgtaatatccttaccaaatgagttaaacttatgaagattcttttattcccgtttctatatgcaaagaagcnnnnnnnttt 618  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||       |||    
T  54608889 tccaaccccgacatataatatgtaatatccttactaaatgagttaaacttaagaagattcttttattcccgtttctatatgtaaagaagcaaaggaattt 54608988  T
Q  619 atttggggatcaaatgtggattaaaagaatgtcacttaatatattgagatgaaatctattactctggaatctggatggtaagcttgaattttgaatttga 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54608989 atttggggatcaaatgtggattaaaagaatgtcacttaatatattgagatgaaatctattactctggaatctggatggtaagcttgaattttgaatttga 54609088  T
Q  719 atcgggctacattgacacatcgaaacaaaatttgggttagggtaccgaatgataagtataat 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54609089 atcgggctacattgacacatcgaaacaaaatttgggttagggtaccgaaggataagtataat 54609150  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 576
Target Start/End: Complemental strand, 37310091 - 37310024
Alignment:
Q  509 gggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaaacttatgaagat 576  Q
    |||||| ||| ||||||||  ||||||||||| ||||||| |||||| ||||||||||| | ||||||    
T  37310091 gggtttgaaccccaacccctacatataatatgcaatatccataccaactgagttaaactcacgaagat 37310024  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 560
Target Start/End: Complemental strand, 39023258 - 39023188
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgag 560  Q
    |||||||||||||| |||||||||  ||| || |||||  ||||||||||| ||||||| |||||| ||||    
T  39023258 tggagaagtggagtgtccagggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgag 39023188  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 560
Target Start/End: Complemental strand, 45849130 - 45849060
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgag 560  Q
    |||||||||||||| |||||||||  ||||||| ||||  |||| |||||| ||||||| |||||| ||||    
T  45849130 tggagaagtggagtgtccagggttcgaactccagcccctgcataaaatatgcaatatccctaccaactgag 45849060  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 567
Target Start/End: Original strand, 48674549 - 48674626
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaaact 567  Q
    |||||||||||||| ||| |||||| ||| ||||||||  ||||||| ||| |||||||||| ||| |||||||||||    
T  48674549 tggagaagtggagtgtccggggtttgaaccccaacccctgcatataaaatgcaatatccttatcaactgagttaaact 48674626  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 487 - 564
Target Start/End: Complemental strand, 10241811 - 10241734
Alignment:
Q  487 ttctggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    ||||||||||||||||| ||  |||||| ||| ||||||||  ||||||||||| ||||||| |||||| ||||||||    
T  10241811 ttctggagaagtggagtgtctggggtttgaaccccaacccctgcatataatatgcaatatccctaccaactgagttaa 10241734  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 567
Target Start/End: Original strand, 10758793 - 10758868
Alignment:
Q  492 gagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaaact 567  Q
    |||||||||||| ||  |||||||||| ||| ||||  ||||||||||| |||||| ||||||| |||| ||||||    
T  10758793 gagaagtggagtgtctggggtttaaaccccagcccctacatataatatgcaatatctttaccaattgagctaaact 10758868  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 560
Target Start/End: Original strand, 11146516 - 11146586
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgag 560  Q
    |||||||||||||| ||| |||||  ||||||||||||  ||||||| ||| |||||||||| ||| ||||    
T  11146516 tggagaagtggagtgtccggggttcgaactccaacccctacatataacatgcaatatccttatcaactgag 11146586  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 19891413 - 19891487
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||| ||| || ||  ||| ||||||||  ||||||| ||| |||||||||||||| ||||||||    
T  19891413 tggagaagtggagtatccgggattcgaaccccaacccctgcatataaaatgcaatatccttaccaactgagttaa 19891487  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 7418361 - 7418287
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||| |||||||||  |||||   ||||  ||||||||||| ||||||| |||||||||||||||    
T  7418361 tggagaagtggagtgtccagggttcgaactcaggcccctgcatataatatgcaatatccctaccaaatgagttaa 7418287  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 560
Target Start/End: Original strand, 7865342 - 7865412
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgag 560  Q
    |||||||||||||| ||||||||| |||| ||  ||||  ||||||||||| ||||||| |||||| ||||    
T  7865342 tggagaagtggagtgtccagggttcaaaccccggcccctgcatataatatgcaatatccctaccaactgag 7865412  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 560
Target Start/End: Original strand, 9372188 - 9372258
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgag 560  Q
    |||||||||||||| |||||||||  ||| || |||||  ||||||||||| ||||||| |||||| ||||    
T  9372188 tggagaagtggagtgtccagggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgag 9372258  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 567
Target Start/End: Complemental strand, 15285586 - 15285549
Alignment:
Q  530 catataatatgtaatatccttaccaaatgagttaaact 567  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  15285586 catataatatgtaatatccctaccaactgagttaaact 15285549  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 567
Target Start/End: Complemental strand, 29284349 - 29284272
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaaact 567  Q
    ||||||||||| || ||| |||||  ||||||  |||| |||||||||||| ||||||| |||||| |||| ||||||    
T  29284349 tggagaagtggggtgtccggggttcgaactccggccccttcatataatatgcaatatccctaccaactgagctaaact 29284272  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 555
Target Start/End: Complemental strand, 30916404 - 30916339
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaa 555  Q
    |||||||||||||| |||||||||  ||| ||||||||  ||||||| ||| ||||||| ||||||    
T  30916404 tggagaagtggagtgtccagggttcgaaccccaacccccgcatataacatgcaatatccctaccaa 30916339  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 560
Target Start/End: Original strand, 8971539 - 8971569
Alignment:
Q  530 catataatatgtaatatccttaccaaatgag 560  Q
    |||||||||||||||||||||||||||||||    
T  8971539 catataatatgtaatatccttaccaaatgag 8971569  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 13406683 - 13406609
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||| |||||||||  ||||||  | ||  ||||||||||| ||||||| |||||| ||||||||    
T  13406683 tggagaagtggagtgtccagggttcgaactccggctcctgcatataatatgcaatatccctaccaactgagttaa 13406609  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 564
Target Start/End: Complemental strand, 36918535 - 36918501
Alignment:
Q  530 catataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||||||||||||||| ||||||||    
T  36918535 catataatatgtaatatccttaccaactgagttaa 36918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 567
Target Start/End: Complemental strand, 10573184 - 10573107
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaaact 567  Q
    |||||||||||||| | | |||||  ||| ||||||||  ||||||||||| ||||||| |||||| |||| ||||||    
T  10573184 tggagaagtggagtgttcggggttcgaaccccaacccctgcatataatatgcaatatccctaccaactgagctaaact 10573107  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 555
Target Start/End: Original strand, 24790311 - 24790376
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaa 555  Q
    |||| |||||| || |||||||||  ||| ||||||||  ||||||||||||||||||| ||||||    
T  24790311 tggaaaagtggggtgtccagggttcgaaccccaacccctacatataatatgtaatatccctaccaa 24790376  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 53752687 - 53752761
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||| |||||||||  ||||||  ||||  |||||||||||  |||||| |||||| ||||||||    
T  53752687 tggagaagtggagtgtccagggttcgaactcctgcccctgcatataatatgccatatccctaccaactgagttaa 53752761  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 17601162 - 17601088
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||| |||| ||||  |||||| |||||  ||||| ||||| ||||||| |||||| ||||||||    
T  17601162 tggagaagtggagtgtccatggttcgaactccgacccctgcatatgatatgcaatatccctaccaactgagttaa 17601088  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 555
Target Start/End: Complemental strand, 27016360 - 27016295
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaa 555  Q
    |||||||||||||| |||||||||  |||||| |||||   |||||||||| ||||||| ||||||    
T  27016360 tggagaagtggagtgtccagggttcgaactccgacccctgtatataatatgcaatatccataccaa 27016295  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 3560368 - 3560442
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||| ||  |||||  ||||||| ||||  |||||||||| |||||||| |||||| ||||||||    
T  3560368 tggagaagtggagtatctggggttcgaactccagcccctgcatataatatataatatccctaccaactgagttaa 3560442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 15390303 - 15390229
Alignment:
Q  490 tggagaagtggagtttccagggtttaaactccaaccccgtcatataatatgtaatatccttaccaaatgagttaa 564  Q
    |||||||||||||| |||||||||  ||  ||||||||  ||| ||||||| ||||||| |||||| ||||||||    
T  15390303 tggagaagtggagtgtccagggttcgaatcccaacccctgcatctaatatgcaatatccctaccaactgagttaa 15390229  T

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