View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_23 (Length: 530)
Name: NF16091_low_23
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 29090710 - 29090992
Alignment:
| Q |
16 |
aggtaggtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgttgataa |
115 |
Q |
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| T |
29090710 |
aggtaggtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgttgataa |
29090809 |
T |
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| Q |
116 |
ttgttttgcta-cnnnnnnnttgttccacaatttcagctactgctgctttacacatgtatgatgagttggatttttggaagcttctgattatgaatgaga |
214 |
Q |
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| T |
29090810 |
ttgttttgctaacaaaaaaattgttccacaatttcagctactgctgctttacacatgtatgatgagttggatttttggaagcttctgattatgaatgaga |
29090909 |
T |
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| Q |
215 |
ggtattattattgtttgcaagagtaaatatggagaaaaatgtgagtacttttcacataaatggaggaggatcaccccactacc |
297 |
Q |
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| T |
29090910 |
ggtattattattgtttgcaagagtaaatatggagaaaaatgtgagtacttttcacataaatggaggaggatcaccccactacc |
29090992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 364 - 454
Target Start/End: Original strand, 29091061 - 29091151
Alignment:
| Q |
364 |
gaggtactcccgttttaagatatgagtgtcatttagtgccaaagcacagctataaatccagcaaggagttttaatggtcttagactcttag |
454 |
Q |
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| T |
29091061 |
gaggtactcccgttttaagatatgagtgtcatttagtgccaaagcacagctataaatccagcaaggaattttaatggtcttagactcttag |
29091151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 29091669 - 29091736
Alignment:
| Q |
447 |
actcttagtgatcatatgaagatatccaaatttagagaaagggaacataccagagtcattaagcaagc |
514 |
Q |
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| T |
29091669 |
actcttagtgatcatatgaagatatccaaatttagagaaagggaacataccagagtcattaagcaagc |
29091736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 29087593 - 29087681
Alignment:
| Q |
22 |
gtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgtt |
110 |
Q |
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| T |
29087593 |
gtgtataaagagatagaaaataagccctattgattaataagcttcatgcaagctaccattgtgtcaatttcttcttcctcttttgtgtt |
29087681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 29085111 - 29085219
Alignment:
| Q |
138 |
ttccacaatttcagctactgctgctttacacatgtatgat-gagttggatttttggaagcttctgattatgaatgagaggtattattattgtttgcaaga |
236 |
Q |
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| T |
29085111 |
ttccactatttcagttagtgctactttacacatgt-tgattgagttggatttttggaaggt---ggtta-gtgtgagtggtattattattgtttgaaaga |
29085205 |
T |
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| Q |
237 |
gtaaatatggagaa |
250 |
Q |
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| T |
29085206 |
gtaaatatggagaa |
29085219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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