View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_27 (Length: 524)
Name: NF16091_low_27
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 26497283 - 26497777
Alignment:
| Q |
1 |
ggcctctttaagcaggacttcttgagttgaagaaggatctacgccaccttcttctgtcaatgaagaattcatgaagagtgtagactttccaaatttgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26497283 |
ggcctctttaagcaggacttcttgagttgaagaaggatctacgccaccttcttctgtcaatgaagaattcatgaagagtgtagactttccaaatttgttt |
26497382 |
T |
|
| Q |
101 |
tcagtatccttatctaattgcaatggctgcttctcttcatcagttgcttctgttaaaagaaaagtaattgttatatacatgaaatgggaaaataatttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26497383 |
tcagtatccttatctaattgcaatggctgcttctcttcatcagttgcttctgttaaaagaaaagtaattgttatatacatgaaatgggaaaataatttca |
26497482 |
T |
|
| Q |
201 |
ttttgttagtttttcaagtgaaattattgtcacctataatgctcccatcctcttcattttcatcctgttttgagtgaacttgtacgactcgagagcgttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26497483 |
ttttgttagtttttcaagtgaaattattgtcacctataatgctcccatcctcttcattttcatcctgttttgagtgaacttgtacgactcgagagcgttt |
26497582 |
T |
|
| Q |
301 |
tgacgccttaggaggatcaaagccatttaaagctttccttctgaatatacaacctgatccaatataaacaggtccttgaattccatctaggcacctcaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26497583 |
tgacgccttaggaggatcaaagccatttaaagctttccttctgaatatacaacctgatccaatataaacaggtccttgaattccatctaggcacctcaag |
26497682 |
T |
|
| Q |
401 |
ttgatctgcagaaaaacaaaatagaaagggtaacatgtcattgtcaaatttcattcacataaatacaattaaggtcacctatgaagcactgacac |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26497683 |
ttgatctgcagaaaaacaaaatagaaagggtaacatgtcattgtcaaatttcattcacataaatacaattaaggtcgcctatgaagcactgacac |
26497777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University