View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_29 (Length: 503)

Name: NF16091_low_29
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_29
NF16091_low_29
[»] chr3 (28 HSPs)
chr3 (16-464)||(22647402-22647850)
chr3 (52-377)||(22656371-22656696)
chr3 (52-343)||(22620235-22620526)
chr3 (41-264)||(22105533-22105756)
chr3 (40-261)||(30988726-30988947)
chr3 (40-264)||(21946448-21946672)
chr3 (40-259)||(22053530-22053749)
chr3 (40-264)||(21937977-21938201)
chr3 (41-264)||(21931246-21931469)
chr3 (52-264)||(22180253-22180465)
chr3 (41-198)||(22115910-22116067)
chr3 (40-262)||(22614691-22614913)
chr3 (52-186)||(22628033-22628165)
chr3 (40-264)||(22028824-22029048)
chr3 (40-264)||(22187812-22188036)
chr3 (54-199)||(22467446-22467591)
chr3 (54-278)||(22457905-22458129)
chr3 (54-278)||(22480886-22481110)
chr3 (41-264)||(22035342-22035565)
chr3 (54-199)||(22430665-22430810)
chr3 (91-199)||(22353307-22353415)
chr3 (54-142)||(22367476-22367564)
chr3 (40-150)||(18966519-18966629)
chr3 (54-199)||(22635001-22635146)
chr3 (91-199)||(22357497-22357605)
chr3 (54-197)||(22436128-22436271)
chr3 (91-154)||(22208901-22208964)
chr3 (90-149)||(22629986-22630045)
[»] chr1 (7 HSPs)
chr1 (44-278)||(34976199-34976433)
chr1 (44-278)||(34983310-34983544)
chr1 (52-278)||(34990053-34990279)
chr1 (40-377)||(2304791-2305128)
chr1 (330-372)||(34983590-34983632)
chr1 (330-372)||(34990331-34990373)
chr1 (88-145)||(4257617-4257674)
[»] chr5 (2 HSPs)
chr5 (44-278)||(40580762-40580996)
chr5 (92-229)||(27373349-27373486)
[»] chr7 (2 HSPs)
chr7 (40-262)||(872144-872367)
chr7 (40-262)||(1233421-1233644)


Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Complemental strand, 22647850 - 22647402
Alignment:
Q  16 atgaagttggatcgaggacactgtttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatattt 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  22647850 atgaagttggatcgaggagactgtttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtataccttggaagaagttgcagaacgatattt 22647751  T
Q  116 aactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  22647750 aactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgctgtgttcatgatctgatacatatgatgatc 22647651  T
Q  216 cttgaaaagagtgaggatataagtttctgcaagcatattagtgaagatgatcatttatctttatttgaaatcattcgacgccattcattaacaacctttt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||    
T  22647650 cttgaaaagagtgaggatataagtttctgcaagcatattagtgaagatgatctttcatctttatttgaaatcattcgacgccattcattaacaacctatt 22647551  T
Q  316 ccaaagattttccggcatgtactgaaaattcacatgttcggtcactatttcttttcaaaaatggatcacaacaaatggaggatgaccacttcatgaggag 415  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  22647550 ccaaagattttccggcatgtagtgaaaattcacatgttcggtcactatttcttttcaagaatggatcacaacaaatggaggacgaccacttcatgaggag 22647451  T
Q  416 aatcttaacagaatacagacggttgaaggtgcttaatattgaaggtgct 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22647450 aatcttaacagaatacagacggttgaaggtgcttaatattgaaggtgct 22647402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 52 - 377
Target Start/End: Complemental strand, 22656696 - 22656371
Alignment:
Q  52 tagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatc 151  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |   || ||||||| ||||||||    
T  22656696 tagctgaaggttttgtgaaagaagaaagggggaaaactttggaagaagttgcagaaggatatttaacagagttgattcgccgatgtttggtacaagtatc 22656597  T
Q  152 ttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttctgcaagcat 251  Q
     |||||||||||||| ||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  22656596 ctcagttagaattgacggaaaaactaaaagttgttgtgtccatgatttaatacatatgatgatccttgaaaagtgtgaggatttaagtttctgcaagcat 22656497  T
Q  252 attagtgaagatgatcatttatctttatttgaaatcattcgacgccattcattaacaaccttttccaaagattttccggcatgtactgaaaattcacatg 351  Q
    ||||||| |||||  |||| |||| ||  || ||| ||||||||||  ||| || || |   |||||| |||||  |  |||||| |||||| ||| |||    
T  22656496 attagtgcagatggccattcatctataagtggaattattcgacgcctatcaatatcagctaattccaatgatttagcaacatgtattgaaaactcatatg 22656397  T
Q  352 ttcggtcactatttcttttcaaaaat 377  Q
    ||||||||||||||||||||| ||||    
T  22656396 ttcggtcactatttcttttcacaaat 22656371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 52 - 343
Target Start/End: Complemental strand, 22620526 - 22620235
Alignment:
Q  52 tagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatc 151  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  22620526 tagctgaagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatc 22620427  T
Q  152 ttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttctgcaagcat 251  Q
    |||| | ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| |||||| ||    
T  22620426 ttcactaagaatcgatggaaaaacaaaaagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtat 22620327  T
Q  252 attagtgaagatgatcatttatctttatttgaaatcattcgacgccattcattaacaaccttttccaaagattttccggcatgtactgaaaa 343  Q
    ||||||||||||  ||||| |||||||  |||| | | ||||||||  ||| || |||||  |||||| ||||||  |||||| ||| ||||    
T  22620326 attagtgaagattgtcattcatctttaagtgaagttactcgacgcctatcaatagcaaccaattccaatgattttatggcatgcactaaaaa 22620235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 22105533 - 22105756
Alignment:
Q  41 tcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttg 140  Q
    |||||| ||| |||||||||| |||||||| || |||| |||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||  ||    
T  22105533 tcgacaatggatagctgaagggtttgtgaaggaggaaaaggggaagactttggacgaagtggcagaaggatatttaacagagttgatccatagaagcctg 22105632  T
Q  141 gttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtt 240  Q
    ||||||||||| ||  ||||||||||||| ||||||||| ||||| ||||||||||||| ||||||   |||||||||| ||||| ||||||| | | ||    
T  22105633 gttcaagtatcctcgcttagaattgatggcaaaactaaaggttgtcgtgttcatgatctaatacgtgatatgatccttgcaaagaatgaggattttaatt 22105732  T
Q  241 tctgcaagcatattagtgaagatg 264  Q
    | ||||||||||||||||| ||||    
T  22105733 tttgcaagcatattagtgatgatg 22105756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 40 - 261
Target Start/End: Complemental strand, 30988947 - 30988726
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||| |||||||||||||| || ||||| || ||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||    
T  30988947 ttcgacaatgggtagctgaagggttcgtgaaggaggaaagagggaagactttggaagacgttgcagaaggatatttaacagagttgatccatagaagctt 30988848  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    ||| ||||||||||| |||||| ||||||| ||| ||||| ||||| ||||||||||||| |||||    ||||||||||||||   ||||||| ||| |    
T  30988847 ggtgcaagtatcttcggttagagttgatggtaaagctaaaggttgtcgtgttcatgatctaatacgcgatatgatccttgaaaaatttgaggatttaaat 30988748  T
Q  240 ttctgcaagcatattagtgaag 261  Q
    || ||||||| ||| |||||||    
T  30988747 ttttgcaagcttatcagtgaag 30988726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 21946448 - 21946672
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||| ||| |||||||||| |||||||| || ||||| ||| | |||||||||||||| ||||||||||||||||| |||||||||||||||||  |    
T  21946448 ttcgacaatggatagctgaagggtttgtgaaggaggaaagagggaagactttggaagaagtggcagaaggatatttaacagagttgatccatagaagcct 21946547  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    |||||||||||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||| ||| | |  ||||||||||||||    |||||| | | |    
T  21946548 ggttcaagtatcttcacttagaattgatggtaaagctaaaggttgtcgtgttcatgatctaatatgcaatatgatccttgaaaaacacgaggattttaat 21946647  T
Q  240 ttctgcaagcatattagtgaagatg 264  Q
    || |||||||||| |||||| ||||    
T  21946648 ttttgcaagcatagtagtgatgatg 21946672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 40 - 259
Target Start/End: Original strand, 22053530 - 22053749
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||| ||| |||| ||||| |||||||| || |||| |||| | |||||||||||||| ||||||||||||||| | |||||||||||||||||  |    
T  22053530 ttcgacaatggatagcagaagggtttgtgaaggaggaaaaggggaagactttggaagaagtggcagaaggatatttatcagagttgatccatagaagcct 22053629  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    |||||||||||||||| ||||||||||||| ||| ||||| | ||| ||||||||||||| ||||  |  |||||||||||| | ||||||||| | | |    
T  22053630 ggttcaagtatcttcacttagaattgatggcaaagctaaaggatgtcgtgttcatgatctaatacacaatatgatccttgaagaaagtgaggattttaat 22053729  T
Q  240 ttctgcaagcatattagtga 259  Q
    || | |||||||||||||||    
T  22053730 ttttccaagcatattagtga 22053749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 21937977 - 21938201
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||| ||| ||||||||||||||||||| || |||| |||  | ||| |||||||||| ||||| |||||| |||| |||||||| ||||||||  |    
T  21937977 ttcgacaatggatagctgaaggatttgtgaaggaggaaaagggaaagactatggaagaagtggcagagggatatctaacagagttgatacatagaagcct 21938076  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    |||||||||||| ||| ||||||||||||| ||| ||||| ||||| ||||||||||||| ||||||   ||||||||||||||   ||||||| | | |    
T  21938077 ggttcaagtatcctcacttagaattgatggcaaagctaaaggttgtcgtgttcatgatctaatacgtgatatgatccttgaaaaagatgaggattttaat 21938176  T
Q  240 ttctgcaagcatattagtgaagatg 264  Q
    || ||||||||||| ||||| ||||    
T  21938177 ttttgcaagcatatcagtgatgatg 21938201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 21931246 - 21931469
Alignment:
Q  41 tcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttg 140  Q
    |||||| ||| |||||||||| ||||| || || |||| ||||   |||||||||||||| ||||||||||||||||| |||||||||||||||||  |     
T  21931246 tcgacaatggatagctgaagggtttgtcaaggaggaaaaggggatgactttggaagaagtggcagaaggatatttaacagagttgatccatagaagcctc 21931345  T
Q  141 gttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtt 240  Q
    ||||||||||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||| ||||     ||||||||| ||||   ||||||| | | ||    
T  21931346 gttcaagtatcttcacttagaattgatggcaaagctaaaggttgtcgtgttcatgatctaatacacgatatgatccttcaaaaacatgaggattttaatt 21931445  T
Q  241 tctgcaagcatattagtgaagatg 264  Q
    | ||||||||||||||||| ||||    
T  21931446 tttgcaagcatattagtgatgatg 21931469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 52 - 264
Target Start/End: Original strand, 22180253 - 22180465
Alignment:
Q  52 tagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatc 151  Q
    |||||||||| |||||||| || |||| |||  | ||  |||||||||| ||||| |||||| |||| |||||||||||||||||  |||||||||||||    
T  22180253 tagctgaagggtttgtgaaggaggaaaagggaaaaacaatggaagaagtggcagagggatatctaacagagttgatccatagaagcctggttcaagtatc 22180352  T
Q  152 ttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttctgcaagcat 251  Q
    |||  ||||||||||||| ||| ||||| ||||| ||||||||||||| ||||||   ||||||||| |||| | ||||||| | | ||| |||||||||    
T  22180353 ttcgcttagaattgatggcaaagctaaaggttgtcgtgttcatgatctaatacgtgatatgatccttcaaaaaaatgaggattttaatttttgcaagcat 22180452  T
Q  252 attagtgaagatg 264  Q
    |||||||| ||||    
T  22180453 attagtgatgatg 22180465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 22115910 - 22116067
Alignment:
Q  41 tcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttg 140  Q
    |||||| ||| |||||||||| |||||||| || ||||||||  | ||| |||| ||||| ||||| |||||| |||| |||||||||||||||||| ||    
T  22115910 tcgacaatggatagctgaagggtttgtgaaggaggaaaggggaaagactatggatgaagtggcagagggatatataacagagttgatccatagaagtatg 22116009  T
Q  141 gttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatc 198  Q
    ||||||||||||||  ||||||||||||| ||| ||||| ||||| ||||||||||||    
T  22116010 gttcaagtatcttcgcttagaattgatggcaaagctaaaggttgtcgtgttcatgatc 22116067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 262
Target Start/End: Complemental strand, 22614913 - 22614691
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    |||| |||||| |||||||||| ||||||||||| ||||||||| | || || ||||||||||| |||   |||||| | ||||||||  ||||||||||    
T  22614913 ttcgtcagtggatagctgaagggtttgtgaaagaggaaagggggaagacattagaagaagttgcggaaacttatttatcagagttgattaatagaagttt 22614814  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    ||| ||| | |||||  |||  ||||||||||||  |||||||||| |||||||||||||  ||||| |||||||| |||||||   | ||||| |||||    
T  22614813 ggtgcaaatctcttcgattaatattgatggaaaagttaaaagttgtcgtgttcatgatctattacgtgtgatgatctttgaaaaatttaaggatttaagt 22614714  T
Q  240 ttctgcaagcatattagtgaaga 262  Q
    || |||   ||||||||||||||    
T  22614713 ttttgctgccatattagtgaaga 22614691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 22628165 - 22628033
Alignment:
Q  52 tagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatc 151  Q
    |||||||||||||||||||||||||||||||  | ||||| ||||||||  |||||||||||||||| ||| ||||  || |||||||||| ||||||||    
T  22628165 tagctgaaggatttgtgaaagaagaaaggggaaaaactttcgaagaagtcacagaaggatatttaacagag-tgat-tatcgaagtttggtgcaagtatc 22628068  T
Q  152 ttcagttagaattgatggaaaaactaaaagttgtt 186  Q
     ||| |||||||||||||||||| |||||||||||    
T  22628067 gtcacttagaattgatggaaaaattaaaagttgtt 22628033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 22028824 - 22029048
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||| ||| |||||||||| ||||| |  || |||| || | | |||||| ||||||| ||||| |||||| | |  ||||||||| |||||||  |    
T  22028824 ttcgacaatggatagctgaagggtttgtaagggaggaaaaggagaagactttgcaagaagtggcagagggatatctcatagagttgatcaatagaagcct 22028923  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    ||| |||||||||||| ||| ||||||||| ||| ||||| | ||| ||||||||||||| ||||| |  |||||||||||||| ||||||||| | | |    
T  22028924 ggtgcaagtatcttcacttaaaattgatggcaaagctaaaggatgtcgtgttcatgatctaatacgcaatatgatccttgaaaaaagtgaggattttaat 22029023  T
Q  240 ttctgcaagcatattagtgaagatg 264  Q
    || ||||||||| ||||||| ||||    
T  22029024 ttttgcaagcatgttagtgatgatg 22029048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 22187812 - 22188036
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||| ||| |||||||||| ||||| |  || |||| || | | |||||| ||||||| ||||| |||||| | |  ||||||||| |||||||  |    
T  22187812 ttcgacaatggatagctgaagggtttgtaagggaggaaaaggagaagactttgcaagaagtggcagagggatatctcatagagttgatcaatagaagcct 22187911  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    ||| |||||||||||| ||| ||||||||| ||| ||||| | ||| ||||||||||||| ||||| |  |||||||||||||| ||||||||| | | |    
T  22187912 ggtgcaagtatcttcacttaaaattgatggcaaagctaaaggatgtcgtgttcatgatctaatacgcaatatgatccttgaaaaaagtgaggattttaat 22188011  T
Q  240 ttctgcaagcatattagtgaagatg 264  Q
    || ||||||||| ||||||| ||||    
T  22188012 ttttgcaagcatgttagtgatgatg 22188036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 22467591 - 22467446
Alignment:
Q  54 gctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatctt 153  Q
    |||||||| |||||||| ||||| ||||||   || |||||||| ||||| |||||||||||||  ||||||||||||||||||||||| ||||||  ||    
T  22467591 gctgaagggtttgtgaaggaagacagggggaggacattggaagaggttgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagttt 22467492  T
Q  154 cagttagaattgatggaaaaactaaaagttgttgtgttcatgatct 199  Q
    || | || |||||||||| |   ||||||||| |||||||||||||    
T  22467491 caataagtattgatggaagagtaaaaagttgtcgtgttcatgatct 22467446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 278
Target Start/End: Complemental strand, 22458129 - 22457905
Alignment:
Q  54 gctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatctt 153  Q
    |||||||||||||||||||| || | ||   | || |||||||| |||||||| ||||||||||| || ||||||  |||| ||||||| ||||||  ||    
T  22458129 gctgaaggatttgtgaaagatgatatggtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagttt 22458030  T
Q  154 cagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttctgcaagcatat 253  Q
    || |||| |||||||||| | | |||||||||||||||||||||||| | | |    |||||||||||||  |||| ||  ||||||| |||||| ||||    
T  22458029 caattagtattgatggaagagcaaaaagttgttgtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatat 22457930  T
Q  254 tagtgaagatgatcatttatcttta 278  Q
    ||| || ||||| || | |||||||    
T  22457929 tagcgaggatgaccaatcatcttta 22457905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 278
Target Start/End: Complemental strand, 22481110 - 22480886
Alignment:
Q  54 gctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatctt 153  Q
    |||||||||||||||||||| || | ||   | || |||||||| |||||||| ||||||||||| || ||||||  |||| ||||||| ||||||  ||    
T  22481110 gctgaaggatttgtgaaagatgatatggtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagttt 22481011  T
Q  154 cagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttctgcaagcatat 253  Q
    || |||| |||||||||| | | |||||||||||||||||||||||| | | |    |||||||||||||  |||| ||  ||||||| |||||| ||||    
T  22481010 caattagtattgatggaagagcaaaaagttgttgtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatat 22480911  T
Q  254 tagtgaagatgatcatttatcttta 278  Q
    ||| || ||||| || | |||||||    
T  22480910 tagcgaggatgaccaatcatcttta 22480886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 22035342 - 22035565
Alignment:
Q  41 tcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttg 140  Q
    |||||| ||| |||||||||| ||| |||| || |||| |||  | ||  |||||||| | || || |||||| |||  |||||||||||||||||  ||    
T  22035342 tcgacaatggatagctgaagggtttatgaaggaggaaaagggaaagacaatggaagaactggctgagggatatctaatagagttgatccatagaagcctg 22035441  T
Q  141 gttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtt 240  Q
    ||||||||||| ||  ||||||||||||| ||| ||||| ||||| ||||||||||||| |||||    ||||||||| |||| | | ||||| | | ||    
T  22035442 gttcaagtatcctcgcttagaattgatggcaaagctaaaggttgtcgtgttcatgatctaatacgcgatatgatccttcaaaaaaataaggattttaatt 22035541  T
Q  241 tctgcaagcatattagtgaagatg 264  Q
    | ||||||||||||||||| ||||    
T  22035542 tttgcaagcatattagtgatgatg 22035565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 22430810 - 22430665
Alignment:
Q  54 gctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatctt 153  Q
    |||||||| |||||||||||| ||| |||    || ||| |||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||  ||    
T  22430810 gctgaagggtttgtgaaagaaaaaacgggaaggacattgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagtagatt 22430711  T
Q  154 cagttagaattgatggaaaaactaaaagttgttgtgttcatgatct 199  Q
    || | || |||||||||| |   | ||||||| |||||||||||||    
T  22430710 caataagtattgatggaagagtaagaagttgtcgtgttcatgatct 22430665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 22353415 - 22353307
Alignment:
Q  91 tggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgt 190  Q
    ||||||| |||||||||||||||||||  ||||| ||||||||||||||||| ||||||  |||||| || |||||||||| |   ||||||||| ||||    
T  22353415 tggaagaggttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaagagtaaaaagttgtcgtgt 22353316  T
Q  191 tcatgatct 199  Q
    ||| |||||    
T  22353315 tcacgatct 22353307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 22367564 - 22367476
Alignment:
Q  54 gctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggt 142  Q
    |||||||| ||||||||||||||||||||    || |||||||| |||||||||||| ||||||  |||||||||| ||||||||||||    
T  22367564 gctgaagggtttgtgaaagaagaaaggggaatgacattggaagaggttgcagaaggacatttaatagagttgatccgtagaagtttggt 22367476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 18966629 - 18966519
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||| ||| |||||||||| |||||||| || ||||| ||| | |||||||||||| ||||||||||||   |||  ||||| ||||||||||| ||    
T  18966629 ttcgacaatggatagctgaagggtttgtgaaggaggaaagcgggaagactttggaagaaattgcagaaggattcctaatagagttaatccatagaagctt 18966530  T
Q  140 ggttcaagtat 150  Q
    ||| |||||||    
T  18966529 ggtgcaagtat 18966519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 22635146 - 22635001
Alignment:
Q  54 gctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatctt 153  Q
    |||||||| || ||||||||||| |||||    || || ||||| ||||||||||||||||||   ||||||||||||||||||||||| ||||||  ||    
T  22635146 gctgaagggttcgtgaaagaagacaggggaaggacatttgaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagttt 22635047  T
Q  154 cagttagaattgatggaaaaactaaaagttgttgtgttcatgatct 199  Q
    ||  ||| |||||||||| |   ||||||||  | |||||||||||    
T  22635046 caactagtattgatggaagagtaaaaagttgccgcgttcatgatct 22635001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 22357605 - 22357497
Alignment:
Q  91 tggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgt 190  Q
    ||||||| |||||||||||||||||||  ||||| || |||||||||||||| ||||||  |||| | || |||||||||| |   ||| ||||| ||||    
T  22357605 tggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagtagattcaatcagtattgatggaagagtaaaacgttgtcgtgt 22357506  T
Q  191 tcatgatct 199  Q
    |||||||||    
T  22357505 tcatgatct 22357497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 22436271 - 22436128
Alignment:
Q  54 gctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatctt 153  Q
    |||||||| || ||||||||||| |||||    || ||||||||  ||||| ||||||||||||  |||||| || ||||||||||||| || |||  ||    
T  22436271 gctgaagggttcgtgaaagaagagaggggaaggacattggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagttt 22436172  T
Q  154 cagttagaattgatggaaaaactaaaagttgttgtgttcatgat 197  Q
    || | || |||||||||| |   ||||||||| |||||||||||    
T  22436171 caataagtattgatggaagagtaaaaagttgtcgtgttcatgat 22436128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 22208901 - 22208964
Alignment:
Q  91 tggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatcttc 154  Q
    |||||||| |||| |||  ||||||||| ||||||||||||||||| |||||||  ||||||||    
T  22208901 tggaagaaattgcggaacaatatttaacagagttgatccatagaaggttggttcttgtatcttc 22208964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 22630045 - 22629986
Alignment:
Q  90 ttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagta 149  Q
    |||||||| |||| ||||||||||||||  |||||| ||| |||||||||||| ||||||    
T  22630045 ttggaagaggttggagaaggatatttaatagagttggtccgtagaagtttggtgcaagta 22629986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 34976199 - 34976433
Alignment:
Q  44 acagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggtt 143  Q
    ||||||| |||||||||| |||||||| || ||||| ||  | |||||||||||||||||| ||||||||||||| |||||||| | | ||||||||||     
T  34976199 acagtggatagctgaagggtttgtgaaggaggaaagtggcaagactttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtg 34976298  T
Q  144 caagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttct 243  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |    
T  34976299 caagtatcctcagttagaattgatggaaagcctaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagttttt 34976398  T
Q  244 gcaagcatattagtgaagatgatcatttatcttta 278  Q
    |||||||| | | |||||||| ||||| |||||||    
T  34976399 gcaagcatttcaatgaagatggtcattcatcttta 34976433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 34983310 - 34983544
Alignment:
Q  44 acagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggtt 143  Q
    ||||||| |||||||||| |||||||| || ||||| ||  | |||||||||||||||||| ||||||||||||| |||||||| | | ||||||||||     
T  34983310 acagtggatagctgaagggtttgtgaaggaggaaagtggcaagactttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtg 34983409  T
Q  144 caagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttct 243  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |    
T  34983410 caagtatcctcagttagaattgatggaaagcctaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagttttt 34983509  T
Q  244 gcaagcatattagtgaagatgatcatttatcttta 278  Q
    |||||||| | | |||||||| ||||| |||||||    
T  34983510 gcaagcatttcaatgaagatggtcattcatcttta 34983544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 52 - 278
Target Start/End: Original strand, 34990053 - 34990279
Alignment:
Q  52 tagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatc 151  Q
    |||||||||| ||||||||||| ||||| ||| | |||||||||||||||| |||| |||||||||| |||||||| | |||||||||||| ||||||||    
T  34990053 tagctgaagggtttgtgaaagaggaaagtgggaagactttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgcaagtatc 34990152  T
Q  152 ttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttctgcaagcat 251  Q
     |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||    
T  34990153 ctcagttagcattgatggaaaaactagaagttgttgtgttcatgatctgatacatatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcat 34990252  T
Q  252 attagtgaagatgatcatttatcttta 278  Q
     | | ||| || ||||||| |||||||    
T  34990253 ttcaatgatgacgatcattcatcttta 34990279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 40 - 377
Target Start/End: Complemental strand, 2305128 - 2304791
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagttt 139  Q
    ||||||||||| |||||||||| |||||||| || ||||| ||| | |||||||||||||||||||||||||||||| | |||||||| | | |||||||    
T  2305128 ttcgacagtggatagctgaagggtttgtgaaggaggaaagtgggaagactttggaagaagttgcagaaggatatttatcagagttgattcgtcgaagttt 2305029  T
Q  140 ggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagt 239  Q
    ||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||| |||||    
T  2305028 ggtgcaagtatcctcagttagcattgatggaaaatctaaaagttgttgtgttcatgatctgatacgtataatgttcctagaaaagtgtgaggatttaagt 2304929  T
Q  240 ttctgcaagcatattagtgaagatgatcatttatctttatttgaaatcattcgacgccattcattaacaaccttttccaaagattttccggcatgtactg 339  Q
    || | ||||||| | | |||||   |||||| |||||||  || ||  ||| |||||   ||| || |||||| |||||   ||||   |||||||| ||    
T  2304928 tttttcaagcatttcaatgaagtcaatcattcatctttaagtggaactattagacgcttatcaatagcaacctattccagttatttaagggcatgtattg 2304829  T
Q  340 aaaattcacatgttcggtcactatttcttttcaaaaat 377  Q
    |||| |||||| |||||||| ||||| |||||| ||||    
T  2304828 aaaactcacatattcggtcagtattttttttcacaaat 2304791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 34983590 - 34983632
Alignment:
Q  330 gcatgtactgaaaattcacatgttcggtcactatttcttttca 372  Q
    ||||||| |||||| |||||| |||||||||||||||||||||    
T  34983590 gcatgtaatgaaaactcacatattcggtcactatttcttttca 34983632  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 34990331 - 34990373
Alignment:
Q  330 gcatgtactgaaaattcacatgttcggtcactatttcttttca 372  Q
    ||||||| |||||| |||||| |||||||||||||||||||||    
T  34990331 gcatgtattgaaaactcacatattcggtcactatttcttttca 34990373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 4257617 - 4257674
Alignment:
Q  88 ctttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttca 145  Q
    ||||||| ||||||| ||| | |||||| || ||||||||||| ||||||||||||||    
T  4257617 ctttggaggaagttggagaggaatatttgacagagttgatccacagaagtttggttca 4257674  T

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Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 40580762 - 40580996
Alignment:
Q  44 acagtgggtagctgaaggatttgtgaaagaagaaagggggtatactttggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggtt 143  Q
    ||||||| |||||||||| |||||||| || ||||| ||  | ||||||||||||||||| |||| |||||||||||||||||| | | | ||||||||     
T  40580762 acagtggatagctgaagggtttgtgaaggaggaaagtggaaagactttggaagaagttgctgaagtatatttaactgagttgattcgtcgtagtttggtg 40580861  T
Q  144 caagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataagtttct 243  Q
    |||||||| ||| |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||| |||||||  ||||||| |    
T  40580862 caagtatcctcaattagaattgatggaaaaactaaaagttgttttgttcacgatttgatacgtatgatgatccatgaaaagtgtgaggaattaagttttt 40580961  T
Q  244 gcaagcatattagtgaagatgatcatttatcttta 278  Q
    |||||||| | | |||||||| ||||| |||||||    
T  40580962 gcaagcatttcaatgaagatggtcattcatcttta 40580996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 27373349 - 27373486
Alignment:
Q  92 ggaagaagttgcagaaggatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgtt 191  Q
    ||||||||||||||  | ||||||||   ||||||||||||||| |||||| ||||| | ||||  ||||||  |||||| ||||| | |||||| ||      
T  27373349 ggaagaagttgcagccgaatatttaaacaagttgatccatagaaatttggtgcaagtttattcaagtagaataaatggaacaactagaggttgttttgac 27373448  T
Q  192 catgatctgatacgtatgatgatccttgaaaagagtga 229  Q
    |||||||| ||||||  |||||||||| ||||| ||||    
T  27373449 catgatctaatacgtgagatgatccttaaaaagtgtga 27373486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 262
Target Start/End: Complemental strand, 872367 - 872144
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtat-actttggaagaagttgcagaaggatatttaactgagttgatccatagaagtt 138  Q
    |||||| |||| |||||||||| |||||||| || |||||| || |  |||| ||||||| ||||||||||||||||| | ||||| |||||||||   |    
T  872367 ttcgacggtggatagctgaagggtttgtgaaggaggaaaggaggaaagacttgggaagaatttgcagaaggatatttagccgagtttatccatagattct 872268  T
Q  139 tggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataag 238  Q
    |||| |||||||| ||| || || ||||||| ||| |||||  |||| |||||||||||||  ||| |    |||||||||||||   ||||||| |||     
T  872267 tggtgcaagtatcatcacttggagttgatggtaaagctaaagtttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaa 872168  T
Q  239 tttctgcaagcatattagtgaaga 262  Q
    ||| ||||||||||||||||||||    
T  872167 tttttgcaagcatattagtgaaga 872144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 262
Target Start/End: Complemental strand, 1233644 - 1233421
Alignment:
Q  40 ttcgacagtgggtagctgaaggatttgtgaaagaagaaagggggtat-actttggaagaagttgcagaaggatatttaactgagttgatccatagaagtt 138  Q
    |||||| |||| |||||||||| |||||||| || |||||| || |  |||| ||||||| ||||||||||||||||| | ||||| |||||||||   |    
T  1233644 ttcgacggtggatagctgaagggtttgtgaaggaggaaaggaggaaagacttgggaagaatttgcagaaggatatttagccgagtttatccatagattct 1233545  T
Q  139 tggttcaagtatcttcagttagaattgatggaaaaactaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagagtgaggatataag 238  Q
    |||| |||||||| ||| || || ||||||| ||| |||||  |||| |||||||||||||  ||| |    |||||||||||||   ||||||| |||     
T  1233544 tggtgcaagtatcatcacttggagttgatggtaaagctaaagtttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaa 1233445  T
Q  239 tttctgcaagcatattagtgaaga 262  Q
    ||| ||||||||||||||||||||    
T  1233444 tttttgcaagcatattagtgaaga 1233421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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