View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_3 (Length: 752)
Name: NF16091_low_3
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 18 - 738
Target Start/End: Original strand, 14727491 - 14728199
Alignment:
| Q |
18 |
tgactgaactattgtatttcattttaccatttgtggcggaagattctagtaaattcataattgattctttcttgannnnnnnnaatcttttcttaattct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14727491 |
tgactgaactattgtatttcattttaccatttgtggcggaagattctagtaaattcataattgattctttcttgattttttttaatcttttcttaattct |
14727590 |
T |
|
| Q |
118 |
gttatcaagaatatgctgccttattttttattttcatatgtataaagcggaatcttctggagaggaaaaggccagagatataatctagtccgacatattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14727591 |
gttatcaagaatatgctgccttattttttattttcatatgtataaagcggaatcttctggagaggaaaaggccagagatataatctagtccgacatattt |
14727690 |
T |
|
| Q |
218 |
ggaaggcatgctttaaaaagttaaatcatgtaatctatatattttttcagtatgtttacattttttcgctaattatatctttgtacaatgcataacttat |
317 |
Q |
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| T |
14727691 |
ggaaggcatgctttaaaa-gttaa-tcatgtaatttatatattttttcagtatgtttacattttttcgctaattatatctttgtacaatgcataacttat |
14727788 |
T |
|
| Q |
318 |
cattataggtctttggcgttattctgtaaaagacagatataatactattgcatagcctaaatgttggattctcttagttgttgtagaagttctctccatt |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14727789 |
cattataggtctttggcattattctgtaaaagacagatataatactattgcatagcctaaatgttggattctcttagttgttgtagaagttctctccatt |
14727888 |
T |
|
| Q |
418 |
gaatcatgtgcctttttaagtacattctcccaacattttcaataattacatagtcaattgattaccattctactgccaagtttcactgaagtgaagtctg |
517 |
Q |
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| T |
14727889 |
gaatcatgtgcctttttaagtacattctcccaacattttcaataattacatagtcaattaattaccattctactgccaagtttcactgaaatgaagtctg |
14727988 |
T |
|
| Q |
518 |
accttttgtctcaagtgtcccaatttggtaatcatttgatgtcttgataacctctgatctttcattacaatataaaatttccggtaccttattgcttggt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14727989 |
accttttgtctcaagtgtcccaatttggtaatcatttgatgtcttgataaactctgatctttcattacaatataaaatttccggtaccttgttgcttggt |
14728088 |
T |
|
| Q |
618 |
agttatgcaaattatagattggagaatattggaaagtaataaataaaaaatggatattgtggatttatatttatctgaatgtcatgctatttctaccttc |
717 |
Q |
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| T |
14728089 |
agttatgcaaattatag----------attggaaaataataaataaaaaatggatattgtggatttatatttatctgaatgtcatgctatttctaccttc |
14728178 |
T |
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| Q |
718 |
cttttttcctttactcctatg |
738 |
Q |
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| T |
14728179 |
cttttttcctttactcctatg |
14728199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 370020 - 370077
Alignment:
| Q |
408 |
tctctccattgaatcatgtgcctttttaagtacattctcccaacattttcaataatta |
465 |
Q |
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||||||||||||||||||||| |||||||| |||||| || ||| |||||||||||| |
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| T |
370020 |
tctctccattgaatcatgtgcatttttaagcacattcccctgacaatttcaataatta |
370077 |
T |
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