View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_30 (Length: 500)

Name: NF16091_low_30
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_30
NF16091_low_30
[»] chr1 (8 HSPs)
chr1 (18-496)||(656115-656595)
chr1 (319-420)||(653551-653652)
chr1 (430-496)||(656648-656714)
chr1 (265-315)||(653603-653653)
chr1 (52-158)||(24488118-24488224)
chr1 (52-158)||(24496452-24496558)
chr1 (425-480)||(689020-689075)
chr1 (369-420)||(656365-656416)
[»] chr4 (3 HSPs)
chr4 (16-238)||(40114979-40115203)
chr4 (27-152)||(9006816-9006941)
chr4 (98-197)||(42360629-42360727)
[»] chr5 (3 HSPs)
chr5 (49-197)||(3017470-3017620)
chr5 (52-158)||(34291660-34291766)
chr5 (66-151)||(23971217-23971302)
[»] chr2 (1 HSPs)
chr2 (16-92)||(45188691-45188767)
[»] chr6 (1 HSPs)
chr6 (66-152)||(18187976-18188062)


Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 656115 - 656595
Alignment:
Q  18 aacaacacttttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656115 aacaacacttttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattaga 656214  T
Q  118 tagtataagtaaccatctaatgacctaataggagctggcccatacatctgagtaaataatctcaagcggcctagtgctcttaatacttgatatagtgaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656215 tagtataagtaaccatctaatgacctaataggagctggcccatacatctgagtaaataatctcaagcggcctagtgctcttaatacttgatatagtgaac 656314  T
Q  218 ggcaacctatgactttttgagatacatggtttattgatgc--tatgttttattggataatattgcctttgactcagcctcacatggatcaagcattcaac 315  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  656315 ggcaacctatgactttttgagatacatggtttattgatgctatatgttttattggataatatttcccttgactcagcctcacgtggatcaagcattcaac 656414  T
Q  316 gatattaatgtaaatgattgtaggtccactatgagaagagaataaaatcattgtcgttgaatgcttgattcacgtgaggattagtcaaaggaaatattat 415  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656415 gatattaatgtaaatgattgtaggtcaactatgagaagagaataaaatcgttgtcgttgaatgcttgattcacgtgaggattagtcaaaggaaatattat 656514  T
Q  416 tcaattgttcacatataaagatgcatcatgtatgctccattgttcctcccaagagagttcaagtgctcgtgcttttttcat 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  656515 tcaattgttcacatataaagatgcatcatgtatgctccattgttcctcccaggagagttcaagtgctcgtgcttttttcat 656595  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 319 - 420
Target Start/End: Original strand, 653551 - 653652
Alignment:
Q  319 attaatgtaaatgattgtaggtccactatgagaagagaataaaatcattgtcgttgaatgcttgattcacgtgaggattagtcaaaggaaatattattca 418  Q
    |||||||||||||||| |||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||| |||||||| ||    
T  653551 attaatgtaaatgattataggtcaactataagaagagaatagaatcattgttgttgaatgcttgattcacgtgaggctgagtcaaaggcaatattatcca 653650  T
Q  419 at 420  Q
    ||    
T  653651 at 653652  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 656648 - 656714
Alignment:
Q  430 ataaagatgcatcatgtatgctccattgttcctcccaagagagttcaagtgctcgtgcttttttcat 496  Q
    ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  656648 ataaagatgcatcatgtattctccattgttcctcccaagagaatacaagtgctcgtgcttttttcat 656714  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 653653 - 653603
Alignment:
Q  265 tattggataatattgcctttgactcagcctcacatggatcaagcattcaac 315  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  653653 tattggataatattgcctttgactcagcctcacgtgaatcaagcattcaac 653603  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 24488118 - 24488224
Alignment:
Q  52 acatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaataggag 151  Q
    |||||||| |||| ||||| |||||| ||||| | ||||||  |||||||||||||||  |||| |||||| || |||||||||| ||| ||||||||||    
T  24488118 acatctgacttatgtttcattggatacaaccatacatatttggaaaaatgatcaacaatgattaaatagtacaaataaccatctattgatctaataggag 24488217  T
Q  152 ctggccc 158  Q
    | |||||    
T  24488218 ccggccc 24488224  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 24496452 - 24496558
Alignment:
Q  52 acatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaataggag 151  Q
    |||||||| |||| ||||| |||||| ||||| | ||||||  |||||||||||||||  |||| |||||| || |||||||||| ||| ||||||||||    
T  24496452 acatctgacttatgtttcattggatacaaccatacatatttggaaaaatgatcaacaatgattaaatagtacaaataaccatctattgatctaataggag 24496551  T
Q  152 ctggccc 158  Q
    | |||||    
T  24496552 ccggccc 24496558  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 689020 - 689075
Alignment:
Q  425 cacatataaagatgcatcatgtatgctccattgttcctcccaagagagttcaagtg 480  Q
    ||||||||||||| ||||||||||| || |||||||||||||||||| | ||||||    
T  689020 cacatataaagatacatcatgtatggtctattgttcctcccaagagaatacaagtg 689075  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 656416 - 656365
Alignment:
Q  369 tcgttgaatgcttgattcacgtgaggattagtcaaaggaaatattattcaat 420  Q
    |||||||||||||||| ||||||||| | |||||| ||||||||||| ||||    
T  656416 tcgttgaatgcttgatccacgtgaggctgagtcaagggaaatattatccaat 656365  T

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Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 40114979 - 40115203
Alignment:
Q  16 tcaacaacacttttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaatta 115  Q
    ||||||||| |||| |||| |||||| ||| | |||||||| |||||||||||||  ||| | | ||||||||||||  | |||||||||||||| ||||    
T  40114979 tcaacaacatttttaaattgaggaaatatagtggagacatcagatttatttttcatgggaaaaagccaaatatattttgagaaatgatcaacaaatatta 40115078  T
Q  116 gatagtataagtaaccatctaatgacctaataggagctgg--cccatacatctgagtaaataatctcaagcggcctagtgctcttaatacttgatatagt 213  Q
    ||||||||||| |||||||||| ||||||| ||| |||||  |||||||||| ||||||||||||||||| ||||||| |||  |||||||||| |||||    
T  40115079 gatagtataagaaaccatctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagt 40115178  T
Q  214 gaacggcaacctatgactttttgag 238  Q
    ||| |||| | ||||||||||||||    
T  40115179 gaatggcagcttatgactttttgag 40115203  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 9006816 - 9006941
Alignment:
Q  27 tttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataag 126  Q
    ||||||||  ||||| |||| ||||||||| ||||||||||||| ||||||||||| |||||||||  | |||||||| ||||| ||||  || ||||||    
T  9006816 tttgaattgtggaaagataacagagacatcagatttatttttcattggatataacccaatatatttggagaaatgatctacaaatattaagtaatataag 9006915  T
Q  127 taaccatctaatgacctaataggagc 152  Q
    || |||||||| ||||||||||||||    
T  9006916 tagccatctaaggacctaataggagc 9006941  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 42360629 - 42360727
Alignment:
Q  98 aatgatcaacaaaaattagatagtataagtaaccatctaatgacctaataggagctggcccatacatctgagtaaataatctcaagcggcctagtgctct 197  Q
    ||||||| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||  |||||||||| || |||||| ||| ||| || ||||||||||    
T  42360629 aatgatcgacaaagattagatagtacaagtagccatctaacgacctaatgggagct-ccccatacatccgaataaatattcttaagaggtctagtgctct 42360727  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 3017620 - 3017470
Alignment:
Q  49 gagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaatag 148  Q
    |||||||| || || |||||||  |||||||||||  | |||||  || ||||||||||||| ||||||||||| ||||| |||||||| |||||||| |    
T  3017620 gagacatcagacttgtttttcatgggatataaccatttgtattttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatgg 3017521  T
Q  149 gagctgg--cccatacatctgagtaaataatctcaagcggcctagtgctct 197  Q
    |||| ||  |||||||||| || |||||| ||||||| |||||||||||||    
T  3017520 gagcaggtccccatacatccgaataaatattctcaagaggcctagtgctct 3017470  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 34291766 - 34291660
Alignment:
Q  52 acatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaataggag 151  Q
    |||||||| |||| ||||| |||||| ||||| | ||||||  |||||||||||||||  |||| |||||| || |||||||||| ||| ||||||||||    
T  34291766 acatctgacttatgtttcattggatacaaccatacatatttggaaaaatgatcaacaatgattaaatagtacaaataaccatctattgatctaataggag 34291667  T
Q  152 ctggccc 158  Q
    | |||||    
T  34291666 ccggccc 34291660  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 23971217 - 23971302
Alignment:
Q  66 tttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaataggag 151  Q
    ||||| |||||| | |||||| |||||  |||||||||||| |||||||| ||| || | | |||||||||| |||||||||||||    
T  23971217 tttcattggataaagccaaatgtatttggaaaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaataggag 23971302  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 45188767 - 45188691
Alignment:
Q  16 tcaacaacacttttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatattt 92  Q
    ||||||| |||||||||    |||||||||||||| ||||| ||||||||||||||||| || |||||||| |||||    
T  45188767 tcaacaagacttttgaaggctggaaaaataatagacacatcagatttatttttcaatgggtaaaaccaaatgtattt 45188691  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 18187976 - 18188062
Alignment:
Q  66 tttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaataggagc 152  Q
    ||||| |||||| | |||||| |||||  | |||||||||| |||||||| ||| || | | |||||||||| ||||||||||||||    
T  18187976 tttcattggataaagccaaatgtatttggagaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaataggagc 18188062  T

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