View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_34 (Length: 485)
Name: NF16091_low_34
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 79 - 382
Target Start/End: Original strand, 32616058 - 32616372
Alignment:
| Q |
79 |
ttggtacacttcgtttgaatctaaaattatggattgaatctaaaatctattcttctattccataaatcgaaaatttgagtttaccaggttcttgaacata |
178 |
Q |
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| T |
32616058 |
ttggtacacttcgtttgaatctaaaattatggattgaatctaaaatctattcttctattctataaatcgaaaatttgagtttaccaggttcttgaacata |
32616157 |
T |
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| Q |
179 |
tatgaaaattttggactcaataa-nnnnnnncccttgtttcacaaatctggtcctagacaatccctgcaatttcattgacttggaggatgttggaacata |
277 |
Q |
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| T |
32616158 |
tatgaaaattttggactcaataattttttttcccttgtttcacaaatctggtgctagacaat-cctgcaatttcattgacttggaggatgttggaacata |
32616256 |
T |
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| Q |
278 |
gaatgtgtgaattgaaaataaaaactctaaagtctcacatcg-----------acgttatataaagagtgttcatgactctaacagagaatgttttatgc |
366 |
Q |
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| T |
32616257 |
gaatgtgtgaattgaaaataaaaactctaaagtctcacatcgtttagttttcaacgttatataaagagtgttcatgactcttacagagaatgttttatgc |
32616356 |
T |
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| Q |
367 |
acaaaaagaattggtg |
382 |
Q |
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| T |
32616357 |
acaaaaagaattggtg |
32616372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 396 - 469
Target Start/End: Original strand, 32616542 - 32616615
Alignment:
| Q |
396 |
ctttcttttgtatcatcttggattttgcctcaatcaatgtcacctaatcataatccgatgaaaattgctgaaga |
469 |
Q |
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| T |
32616542 |
ctttcttttgtatcatcttggattttgcctcaatcaatgtcacctaatcataatccgatgaaaattgctgaaga |
32616615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 30613527 - 30613491
Alignment:
| Q |
281 |
tgtgtgaattgaaaataaaaactctaaagtctcacat |
317 |
Q |
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| T |
30613527 |
tgtgtgaattggaaataaaaactctagagtctcacat |
30613491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 23488993 - 23489033
Alignment:
| Q |
266 |
tgttggaacatagaatgtgtgaattgaaaataaaaactcta |
306 |
Q |
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| T |
23488993 |
tgttggaacatgaagtgtgtgaattgaaaataaaaactcta |
23489033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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