View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_35 (Length: 484)

Name: NF16091_low_35
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_35
NF16091_low_35
[»] chr1 (8 HSPs)
chr1 (11-468)||(29421855-29422310)
chr1 (49-303)||(29444485-29444730)
chr1 (201-373)||(29474315-29474496)
chr1 (301-373)||(29473526-29473600)
chr1 (11-111)||(29454711-29454808)
chr1 (26-111)||(29474635-29474720)
chr1 (109-173)||(29474485-29474548)
chr1 (200-308)||(29454484-29454598)
[»] chr2 (6 HSPs)
chr2 (169-446)||(12007342-12007635)
chr2 (126-260)||(11988706-11988840)
chr2 (157-240)||(12020055-12020138)
chr2 (301-374)||(11988581-11988655)
chr2 (130-222)||(9363207-9363299)
chr2 (11-52)||(11988962-11989003)


Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 29421855 - 29422310
Alignment:
Q  11 caaaggcaaatagattttcatggttgaagagattgaagatgggccacgcaattagcattcaagtaggttaattgccaatagttttctcacaagcaaacaa 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29421855 caaaagcaaatagattttcatggttgaagagattgaagatgggccacgcaattagcattcaagtaggttacttgccaatagttttctcacaagcaaacaa 29421954  T
Q  111 aaccatattaacatgcatgcatatatacaaaatcacaaagataataaaaagtttcaacacttttgatcaccataacaacatataagccattttcaacact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29421955 aaccatattaacatgcatgcatatatacaaaatcacaaagataataaaaagtttcaacacttttgatcaccgtaacaacatataagccattttcaacact 29422054  T
Q  211 ttcttacacctaaacagacatatatgccatttttctttgcattacttatatatagcatgatcctagtatttacagaccaagtgatactccaaaagaaaga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29422055 ttcttacacctaaacagacatatatgccatttttctttgcattact--tatatagcatgatcctagtatttacagaccaagtgatacttcaaaagaaaga 29422152  T
Q  311 agttatgtacattatgtatctaatcttcaatattatattttggctgagatctttgtttcacttctgcaggcctttctttcactgtaggcaaacggttcta 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29422153 agttatgtacattatgtatctaatcttcaatattatattttggctgagatctttgtttcacttctgcaggcctttctttcactgtaggcaaacggttcta 29422252  T
Q  411 ctgagaatgaatcctctcgtgagattttacatgagagggaaaagtgtgatcttacacc 468  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29422253 ctgagaatgaatcccctcgtgagattttacatgagagggaaaagtgtgatcttacacc 29422310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 49 - 303
Target Start/End: Complemental strand, 29444730 - 29444485
Alignment:
Q  49 atgggccacgcaattagcattcaagtaggttaattgccaatagttttctcacaagcaaacaaaaccatattaacatgcatgcatatatacaaaatcacaa 148  Q
    ||||| ||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  29444730 atgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaaaccacattaacatgcaagcatatatacaaaatcacaa 29444631  T
Q  149 agataataaaaagtttcaacacttttgatcaccataacaacatataagccattttcaacactttcttacacctaaacagacatatatgccatttttcttt 248  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||| |||||||||| ||||  |||||||||||||||||||||||| ||||||||||    
T  29444630 agataataaaaagtttcaacagttttgatcaccat---aacatataaaccattttcaatactt--ttacacctaaacagacatatatgcaatttttcttt 29444536  T
Q  249 gcattacttatatatagcatgatcctagtatttacagaccaagtgatactccaaa 303  Q
    | ||||||    ||||||| |||||||| | |||||||||||||||||| |||||    
T  29444535 gaattact----tatagcaggatcctagcaattacagaccaagtgatacaccaaa 29444485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 201 - 373
Target Start/End: Complemental strand, 29474496 - 29474315
Alignment:
Q  201 tttcaacactttcttacacctaaacagacatatatgccatttttctttgcattacttatatatagcatgatcctagtatttacagaccaagtgatactcc 300  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||    ||| ||| |||| | ||||| ||||||  |||| ||    
T  29474496 tttcaacactttcttacacctaaacaaacatataggccgtttttgtttgcattacttata----gcaagatactagcaattacaaaccaagacatacacc 29474401  T
Q  301 aaa-----------agaaagaagttatgtacattatgtatctaatcttcaatattatattttggct--gagatctttgtttcactt 373  Q
    |||           ||||||||||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  29474400 aaagtaaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactt 29474315  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 29473600 - 29473526
Alignment:
Q  301 aaaagaaagaagttatgtacattatgtatctaatcttcaatattatattttggct--gagatctttgtttcactt 373  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  29473600 aaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactt 29473526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 29454808 - 29454711
Alignment:
Q  11 caaaggcaaatagattttcatggttgaagagattgaagatgggccacgcaattagcattcaagtaggttaattgccaatagttttctcacaagcaaacaa 110  Q
    |||| ||||||||||||||| ||||||||||| |||||||||| ||| ||| |||   ||||||||||||   |||||||||||| ||||||||||||||    
T  29454808 caaaagcaaatagattttcagggttgaagagaatgaagatgggtcacacaaatag---tcaagtaggttacccgccaatagttttttcacaagcaaacaa 29454712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 29474720 - 29474635
Alignment:
Q  26 tttcatggttgaagagattgaagatgggccacgcaattagcattcaagtaggttaattgccaatagttttctcacaagcaaacaaa 111  Q
    ||||| ||| ||||||||||||||  || ||| ||||||| | |||||||||||| |||||||||||||| ||||||| |||||||    
T  29474720 tttcagggtagaagagattgaagacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaa 29474635  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 29474548 - 29474485
Alignment:
Q  109 aaaaccatattaacatgcatgcatatatacaaaatcacaaagataataaaaagtttcaacacttt 173  Q
    |||| |||| |||||||||||||||| |||||||| ||||||||| | |||||||||||||||||    
T  29474548 aaaagcatactaacatgcatgcatatgtacaaaattacaaagatact-aaaagtttcaacacttt 29474485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 29454598 - 29454484
Alignment:
Q  200 ttttcaacactttctt--acacctaaacagacatatatgccatttttctttgcattacttata-----tatagcatgatcctagtatttacagaccaagt 292  Q
    ||||||||||||||||  |||||||||||||||| || | |||||||||||||||| ||||||     |   ||| |||||||| | |||||||||||||    
T  29454598 ttttcaacactttcttacacacctaaacagacat-taggacatttttctttgcattgcttatagcaggtgccgcaggatcctagcaattacagaccaagt 29454500  T
Q  293 gatactccaaaagaaa 308  Q
    ||||| ||||| ||||    
T  29454499 gatacaccaaatgaaa 29454484  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 169 - 446
Target Start/End: Complemental strand, 12007635 - 12007342
Alignment:
Q  169 acttttgatcaccataacaacatataagccattttcaacactttcttacacctaaacagacatatatgccatttttctttgcattacttatatatagcat 268  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||| ||    || ||||     
T  12007635 actttttatcaccataacgacatataagccattttcaacacttttttacacctaaacagacatatgtgtcatttttctttgtattgct----tagagcag 12007540  T
Q  269 gatcctagtatttacagaccaagtgatactcc----------aaaagaaagaagttatgtacattatgtatctaatcttcaatattatattttggc-tga 357  Q
    |||  |   | |||||||||||||||||  ||          |||||| |||||| ||||||||   |||||||| |||||||||||||||||||| |||    
T  12007539 gatgttttcaattacagaccaagtgataaaccaaagaaaaggaaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggcttga 12007440  T
Q  358 gatctttgtttcacttctgcaggcctttctttcactgtaggcaa-------acggttctactgagaatgaa--tcctctcgtgagattttacatgaga 446  Q
    |||||||||||||||||    |||||||||||||||||||||||       |||||||| | |||||||||  |||||  ||||||||||||||||||    
T  12007439 gatctttgtttcacttccatgggcctttctttcactgtaggcaatcctttcacggttctgccgagaatgaatctcctcatgtgagattttacatgaga 12007342  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 11988840 - 11988706
Alignment:
Q  126 catgcatatatacaaaatcacaaagata-ataaaaagtttcaacacttttgatcaccataacaacatataagccattttcaacactttcttacacctaaa 224  Q
    |||||||||||||||||||||| ||||  | |||||   ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  11988840 catgcatatatacaaaatcacatagattgaaaaaaaaaatcaacactttttatcatcataacaacatataagtcattttcaacactttcttacacctaaa 11988741  T
Q  225 cagacatatatgccatttttctttgcattacttata 260  Q
    ||| || ||||| |||||||||||| ||| ||||||    
T  11988740 cag-caaatatggcatttttctttgtattgcttata 11988706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 12020138 - 12020055
Alignment:
Q  157 aaaagtttcaacacttttgatcaccataacaacatataagccattttcaacactttcttacacctaaacagacatatatgccat 240  Q
    |||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12020138 aaaaatttcaacaatttttatcaccataacgacatataagccattttcaacactttcttacacctaaacaaacatatatgccat 12020055  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 11988655 - 11988581
Alignment:
Q  301 aaaagaaagaagttatgtacattatgtatctaatcttcaatattatattttggct-gagatctttgtttcacttc 374  Q
    ||||||||||||| ||||||||   |||||| ||||||| | ||||||||||||| |||||||||||||||||||    
T  11988655 aaaagaaagaagtcatgtacatatggtatctgatcttcagtcttatattttggctagagatctttgtttcacttc 11988581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 9363207 - 9363299
Alignment:
Q  130 catatatacaaaatcacaaagataataaaaagtttcaacacttttgatcaccataacaacatataagccattt-tcaacactttcttacaccta 222  Q
    |||| ||||||||||||| |||| |||||  |||||||||||||| | || | |||| ||||||||||||||| |||||||||| ||| |||||    
T  9363207 catacatacaaaatcacacagattataaattgtttcaacacttttta-caacttaacgacatataagccatttctcaacactttgttaaaccta 9363299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 11989003 - 11988962
Alignment:
Q  11 caaaggcaaatagattttcatggttgaagagattgaagatgg 52  Q
    |||| ||||||||||||||| ||||||||||| |||||||||    
T  11989003 caaaagcaaatagattttcagggttgaagagaatgaagatgg 11988962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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