View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_36 (Length: 483)
Name: NF16091_low_36
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 44493382 - 44493845
Alignment:
| Q |
17 |
atattgatagatagtagtatgcaattcaatcaattgataagaacaatgcatgatatatgtaatagtcggagttcaaatcttagacatcccactttttcat |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||| ||||||||| ||| |
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| T |
44493382 |
atattgatagatagtagtaagcaattcaatcaattgataagaacaatgcatgatatatgtagtggtcggagttcaaacctcagacaccccacttttccat |
44493481 |
T |
|
| Q |
117 |
atttaaaatgcataagcttcggccactagattttttaccnnnnnnngtagtaaacaattaagtcacgtgtttcttagactttaaagcaccacaatggtag |
216 |
Q |
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| T |
44493482 |
atttaaaatgcgtaagttttggccactaaattttttactaaaaaaagtagtaaacaattaagtcacgtgtttcttagactttaaagcaccacaatggtag |
44493581 |
T |
|
| Q |
217 |
atttgaaagctaggaagacaagttaa-tgtcaattctaac-atatatactagtgtatcattgtagattatatgtgtatactgcttgaatcctttacaaac |
314 |
Q |
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| T |
44493582 |
atttgaaagctaggaagacaagttaagtgtcaattctaaccatatatactagtgtatcattgcagattatatgtgtatactgcttgaatcctttactaac |
44493681 |
T |
|
| Q |
315 |
cggttcaattatttgaccttcaatttaatgattcgattatagaaagataatgtttctttgaacttcttaacaagctaagggttgcttttatgtatttaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44493682 |
cggttcaattatttgaccttcaatttaatgattcgattatagaaagataatgtttctttgaacttcttaacaagctaagggttgcttttatgtatttaaa |
44493781 |
T |
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| Q |
415 |
agggcacatctattaactactacgttttcttaaagtgccatagaccattttatatattcttcga |
478 |
Q |
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| T |
44493782 |
agggcacatctattaactactacgttttcttaaagtgccatagaccattttatatgttgttcga |
44493845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 8903692 - 8903659
Alignment:
| Q |
46 |
tcaattgataagaacaatgcatgatatatgtaat |
79 |
Q |
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| T |
8903692 |
tcaattgataaggacaatgcatgatatatgtaat |
8903659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 30626566 - 30626525
Alignment:
| Q |
85 |
gagttcaaatcttagacatcccactttttcatatttaaaatg |
126 |
Q |
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| T |
30626566 |
gagttcgaatctcagacatcccacttgttcatatttaaaatg |
30626525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 6283947 - 6283979
Alignment:
| Q |
46 |
tcaattgataagaacaatgcatgatatatgtaa |
78 |
Q |
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|
| T |
6283947 |
tcaattgataagaacaatgcataatatatgtaa |
6283979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 17842758 - 17842714
Alignment:
| Q |
50 |
ttgataagaacaatgcatgatatatgtaatagtcggagttcaaat |
94 |
Q |
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| T |
17842758 |
ttgataagaacaatgcataatatatgtaagatccggagttcaaat |
17842714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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