View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_38 (Length: 470)
Name: NF16091_low_38
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Complemental strand, 15469799 - 15469347
Alignment:
| Q |
10 |
acctgtgggcaacgtatatgatatatccttaacatttaagatt-------atagaattggttcattttctcacctcttgttgaatcttagaagtgaaatc |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15469799 |
acctgtgagcaacgtatatgatatatccttaacatttaagatttaagattatagaattggttcattttctcacctcttgttgaatct-agaagtgaaata |
15469701 |
T |
|
| Q |
103 |
gttacatacatctaaaatcaaaatt-tagtagtactctataccttccaggcttccacaatattaaatgtagccgacaatatgcacaatttttaacaatta |
201 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15469700 |
gttacatacatctaaaatcaaaattatagtagtactctataccttccaggcttccacaattttaaatgtagccgacaatatgcacaatttttaacaatta |
15469601 |
T |
|
| Q |
202 |
tagtaaccaattttaaatttagctacatttataggatgcaattatagtttcttgcagctctattcaatttttatcataaaaaaggaactctttaagtggt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15469600 |
tagtaaccaattttaaatttagctacatttatagaatgcaattatagtttcttgcagctctattcaatttttatcataaaaaaggaactctttaactggt |
15469501 |
T |
|
| Q |
302 |
cactgtccttgcctnnnnnnnctgctcactgtcccagttttaaaatgttgaatcaatcacaatgattgaagttagtggaattttcttaaaagaagaggaa |
401 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15469500 |
cactgtccttgcctaaaaaaactgctcactgtcccagttttaaaatgttgaatcaatcacaatgattgaagttagtggaattttcttaaaagaagaggaa |
15469401 |
T |
|
| Q |
402 |
ctggactattagttaaattctttggttcttgttcaaataaaaaggttaaattct |
455 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15469400 |
ctggactattagttaaattcttttgttcttgttcaaataaaaaggttaaattct |
15469347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University