View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_39 (Length: 465)
Name: NF16091_low_39
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 414546 - 414144
Alignment:
| Q |
13 |
catcatcagaagcttcaagacgcggaggccaagtttgacgattcttgtaacagagaaaaacgtgacgatcgtaagaagctacggttccagcgaggttttc |
112 |
Q |
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| T |
414546 |
catcatcagaagcttcaagacgcggaggccaagtttgacgattcttgtaacagagaaaaacgtgacgatcgtaagaagctacggttccagcgaggttttc |
414447 |
T |
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| Q |
113 |
tttgtacatctcaggacgagagaaaccgtgtttcgcatcatctgtggcggagacggcgttggttgcggtggtggatgacatggttgcggcgga------a |
206 |
Q |
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| T |
414446 |
tttgtacatctcaggacgagagaaaccgtgtttcgcatcatctgtggcggagacggcgtcggttgcggtggtggatgacatggttgcggcggaagaagaa |
414347 |
T |
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| Q |
207 |
gaaaagagaagaaagtgagatttgaaatcgaaatgagagaatgatgtaatgaaacgaattgagagcatttatttatgggataattataattaattacttt |
306 |
Q |
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| T |
414346 |
gaaaagagaagaaagtgagatttgaaattgaaatgagagaatgatgtaatgaaacgaattgagagcatttatttatgggataattataattaat------ |
414253 |
T |
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| Q |
307 |
gttaaactagttttcaatttttgttcatagtcacagaaatagaatgagttacattttgcgtgttgaagaagaaaacacttaccactaatgcgcgcgttac |
406 |
Q |
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| T |
414252 |
-------tagttttcaatttttgttcatagtcacagaaatagaatgagttacattttgcgtgttgaagaagaaaacacttaccaccaatgcgcgcgttac |
414160 |
T |
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| Q |
407 |
tttcacaaccacgcgc |
422 |
Q |
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| T |
414159 |
tttcacaaccacgcgc |
414144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 401079 - 401202
Alignment:
| Q |
15 |
tcatcagaagcttcaagacgcggaggccaagtttgacgattcttgtaacagagaaaaacgtgacgatcgtaagaagctacggttccagcgaggttttctt |
114 |
Q |
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| T |
401079 |
tcatcggaggcttcaacacacggaggccaagtttggtggttcttgtaacatagaaagacatgacgatcgtaggattcaactgttccagcaaggttttgct |
401178 |
T |
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| Q |
115 |
tgtacatctcaggacgagagaaac |
138 |
Q |
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| T |
401179 |
tgtacatctcataacgggagaaac |
401202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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