View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_45 (Length: 439)
Name: NF16091_low_45
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 366
Target Start/End: Original strand, 5663392 - 5663734
Alignment:
| Q |
24 |
tgtgttgactttgctattctgttataacaatgatattcttcaagttgttgttataattttttggaatgctattctgttttcattgtcatgtttgcttctt |
123 |
Q |
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| T |
5663392 |
tgtgttgactttgctattctgttataataatgatattcttcaagttgatgttataattttttggaatgctattctgtttccattgtcatgtttgcttctt |
5663491 |
T |
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| Q |
124 |
taattgtgttaagttgatttgttgcagctgaagtggattggtctgctattactactggtggcgatgaaaggacgttggagtttgctagacttaaaatttg |
223 |
Q |
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| T |
5663492 |
taactatgtcaagttgatttgttgcagctgaagtggattggtctgctattactacgggtggcgatgaaaggacgttggagtttgctagacttaaaatttt |
5663591 |
T |
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| Q |
224 |
tatgtttggcattgagtagaatccaaaataggtttattctattgtacttgatttatttctaattgtttttatgctactgttgttgtgattttttatcaat |
323 |
Q |
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| T |
5663592 |
tacgtttggcattgagtagaatcaaaaacaggtttattctattgtccttgatttatttctaatggtttttatgctactgttgttgtcattttttatcaat |
5663691 |
T |
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| Q |
324 |
gcagtcaattttcaatagagctgcttctgtatactgttaattg |
366 |
Q |
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| T |
5663692 |
gcagtcaattttcaatagagctgcttctgtatatttttaattg |
5663734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 115 - 317
Target Start/End: Original strand, 35607896 - 35608099
Alignment:
| Q |
115 |
ttgcttctttaattgtgttaagttgatttgttgcagctgaagtggattggtctgctattactactggtggcgatgaaaggacgttggagtttgctagact |
214 |
Q |
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| T |
35607896 |
ttgctgcttaaattgtggtaaattgattttttgcagctgaagtagattggcctgctat---tgttggtgaccatgaaaggcagttggagcttgctagact |
35607992 |
T |
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| Q |
215 |
taaaatttgtatgtttggcattgagtagaatccaaaataggtttattctattgtacttga-tttatttctaattgtttttatgctac---tgttgttgtg |
310 |
Q |
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| T |
35607993 |
gaaattttgtactttttgcattgagtacaatccaaaacaggtttaacctatggtccttgattttttttatgatagtttttatgctactattgctgttgtg |
35608092 |
T |
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| Q |
311 |
atttttt |
317 |
Q |
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| T |
35608093 |
atttttt |
35608099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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