View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_46 (Length: 438)
Name: NF16091_low_46
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 35356338 - 35356182
Alignment:
| Q |
55 |
attttgggtttaatttcataataaatgcattccaaaattaagttaattgtccaaacaata-ttagtgattcctaaatattagaaaaattccattaccagt |
153 |
Q |
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| T |
35356338 |
attttgggtataattccataataaatgcattccaaaattaaattaattgtccaaacaatatttagtgattcctaaatattagaaaaattccattaccagt |
35356239 |
T |
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| Q |
154 |
actaagtgttgacgttaaaagatagactcgatcgcgactatacatacacagcatgtctcattttt |
218 |
Q |
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| T |
35356238 |
gcta-------acgtt-aaagatagactcgatctcgactacacatacacagcatgtctcattttt |
35356182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 35351183 - 35351022
Alignment:
| Q |
55 |
attttgggtttaatttcataataaatgcattccaaaattaagttaattgtccaaacaata-ttagtgattcctaaatattagaaaaattccattaccagt |
153 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||||||| |||||| ||||| |
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| T |
35351183 |
attttgggtttattttcataataaatgcattccaaaattaaattaatcgtccaaacaatatttaatgattcctaaaaattagaaaaaatccatttccagt |
35351084 |
T |
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| Q |
154 |
actaagtgttgacgttaaaagatagactcgatcgcgact----atacatacacagcatgtctcattttt |
218 |
Q |
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| T |
35351083 |
gcta-------acgttaaaaaatagactcgatctcgactatacatacatacacagcatgtctcattttt |
35351022 |
T |
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