View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_47 (Length: 432)
Name: NF16091_low_47
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 7222841 - 7222436
Alignment:
| Q |
9 |
gaggagcagagatcagggaaactccctcccagtaatagggtcccttggagaggagactcggcagtggatgatggaaaactcgctaatgtatgtttctttt |
108 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
7222841 |
gaggcgcaaagatcagggaaactccctcccagtaatagggtcccttggagaggagactcagcagtggatgatggaaaactcgataatgtatgtttctttt |
7222742 |
T |
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| Q |
109 |
tctcaaaacaaaatcattattaggaaaacttgaaataacaacagannnnnnnnactgatgaatattaattatcaaagttacacatannnnnnnnacgtac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| | |||||| |
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| T |
7222741 |
tctcaaaacaaaatcattattaggaaaacttgaaataacaacagattttttttaatggtgaatattaattatcaaagttacacagattttttttacgtac |
7222642 |
T |
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| Q |
209 |
aaaatgaataatttgggcatatgtgtttgattttattgaaatgaataggttgacctatcaggaggatattatgatgccggggacaatgtgaaatatgggc |
308 |
Q |
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| T |
7222641 |
aaaatgaataatttgagcatatgtgtttgattttattgaattgaataggttgacctatcaggaggatattatgatgccggggacaatgtgaaatatgggc |
7222542 |
T |
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| Q |
309 |
taccaatggcattcacagttactacattatcatgggcagcaatattttataaaacagaatttgaagcaacaaatgaaatgggaaatattcaaaatgccat |
408 |
Q |
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| T |
7222541 |
taccaatggcattcacagttactacattatcatgggcagcaatattttataaaacagaatttgaagcaactaatgaaatgggaaatattcaaaatgccat |
7222442 |
T |
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| Q |
409 |
tagatg |
414 |
Q |
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|||||| |
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| T |
7222441 |
tagatg |
7222436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 210 - 405
Target Start/End: Complemental strand, 48527257 - 48527060
Alignment:
| Q |
210 |
aaatgaataatttgggcatatgtgtttgattttattgaaatgaat--aggttgacctatcaggaggatattatgatgccggggacaatgtgaaatatggg |
307 |
Q |
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| T |
48527257 |
aaatgaataatttgggttaatgtgcataattttattgaattgaatgtaggtggacctatctgggggatattatgatgcaggagataatgtgaaatatggg |
48527158 |
T |
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| Q |
308 |
ctaccaatggcattcacagttactacattatcatgggcagcaatattttataaaacagaatttgaagcaacaaatgaaatgggaaatattcaaaatgc |
405 |
Q |
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| T |
48527157 |
ctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaagatgc |
48527060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 48527522 - 48527427
Alignment:
| Q |
18 |
agatcagggaaactccctcccagtaatagggtcccttggagaggagactcggcagtggatgatggaaaactcgctaatgtatgtttctttttctca |
113 |
Q |
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| T |
48527522 |
agatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacgacggcaaactcgctaatgtatctttatttttctca |
48527427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 50303786 - 50303873
Alignment:
| Q |
264 |
tatcaggaggatattatgatgccggggacaatgtgaaatatgggctaccaatggcattcacagttactacattatcatgggcagcaat |
351 |
Q |
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| T |
50303786 |
tatctggaggatattacgatgttggggacaatgtgaaatataggttaccaatggcattcacaattactacattattatgggctgcaat |
50303873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 50304087 - 50304144
Alignment:
| Q |
347 |
gcaatattttataaaacagaatttgaagcaacaaatgaaatgggaaatattcaaaatg |
404 |
Q |
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| T |
50304087 |
gcaatattttacaaaactgaatttgaagcaacaaatgaaataggaaatattcaaaatg |
50304144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 40869243 - 40869188
Alignment:
| Q |
269 |
ggaggatattatgatgccggggacaatgtgaaatatgggctaccaatggcattcac |
324 |
Q |
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| T |
40869243 |
ggaggctactatgatgcaggggacaacgtgaaatttgggctaccgatggcattcac |
40869188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 41915316 - 41915368
Alignment:
| Q |
278 |
tatgatgccggggacaatgtgaaatatgggctaccaatggcattcacagttac |
330 |
Q |
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| T |
41915316 |
tatgatgcaggggataatgtgaaatttgggttaccaatggcatttactgttac |
41915368 |
T |
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