View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_51 (Length: 420)
Name: NF16091_low_51
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 43742598 - 43742216
Alignment:
| Q |
15 |
atgaaggaaaaagatgttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtg |
114 |
Q |
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| T |
43742598 |
atgaaggaaaaagacgttgtcgttttgaaggagcaaaactttaccagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtg |
43742499 |
T |
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| Q |
115 |
gtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattgggttgggttgaaatcatat |
214 |
Q |
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| T |
43742498 |
gtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattggattgggttgaaatcatat |
43742399 |
T |
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| Q |
215 |
gtagaaaatcttaggcaattaatgaggaaaatcaaaatatgaccataaattagtctaaatttccagttttcatgacatnnnnnnngatgtagaggaattg |
314 |
Q |
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| T |
43742398 |
gtagaaaatcttaggcaattaatgaggaaaatcaaaatatgaccataaattagtctaaatttccagttttcatgacatgaaaaaagatgtagaggaattg |
43742299 |
T |
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| Q |
315 |
gcgtttaagatcggaagacaatgacttagtgggaaaggattagaaaataagggaagagaaagagactgcttgttcaaaccagt |
397 |
Q |
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| T |
43742298 |
gcgtttaagatcggaagacaatgacttagtgggaaaggattagaaaataagggaagagaaagagactgcttgttcaaaccagt |
43742216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 21886064 - 21886197
Alignment:
| Q |
24 |
aaagatgttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtggtcactctc |
123 |
Q |
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||||||||||||||||||| |||| |||||| |||| ||||||||||| ||||||||| | |||||||| || |||||||| |||||||| || | || |
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| T |
21886064 |
aaagatgttgtcgttttgattgagcgaaacttcactaccgtaattgaaaacaaccaattcgtgatggttgaattttatgctccgtggtgtggacattgtc |
21886163 |
T |
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| Q |
124 |
aagctctggtgctggagtatgctgcagctgcgac |
157 |
Q |
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||||| ||| || ||||||||||| || ||||| |
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| T |
21886164 |
aagctttggcgccagagtatgctgcggcggcgac |
21886197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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