View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_55 (Length: 412)
Name: NF16091_low_55
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 32813968 - 32813651
Alignment:
| Q |
19 |
gaatcgtgctgagaatggggaatgacaacattctcgagaaaaaagttcaaggtcagttttgaaaaatgattttcctgctagcataatccctttagtttcc |
118 |
Q |
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| T |
32813968 |
gaatcgtgctgagaatggggaatgacaacattctcgagaaaaaagttcaaggtcagttttgaaaaatgattttcctgctagcataatccctttagtttcc |
32813869 |
T |
|
| Q |
119 |
cttctctccttaagactcgaagtacattcctggcagcggttgagagtgacttgcctaagcccatgaattcgcgaatccaaccgcagttaagatgaccgaa |
218 |
Q |
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| T |
32813868 |
cttctctccttaagacttgaagtacattcctggcagcggttgagagtgacttgcc-aggcctatgaattcgcgaatccaaccgcagttaagatgaccgaa |
32813770 |
T |
|
| Q |
219 |
ctaaggtgtaatgtatgctagatacaatttataaattgaattttgaagatg-ttcttttgaaaactgaatttatcaagttatttcttgaatttggaaagt |
317 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
32813769 |
ctaaggtgtaatgtatgctagatacgatttataaattgaattttgaagatgtttcttttgaaaactgaatttattaaattatttcttgaatttggaaagt |
32813670 |
T |
|
| Q |
318 |
aaagaagattatgatcata |
336 |
Q |
| |
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||||||||||||||||||| |
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| T |
32813669 |
aaagaagattatgatcata |
32813651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 42163020 - 42162702
Alignment:
| Q |
19 |
gaatcgtgctgagaatggggaatgacaacattctcgagaaaaaagttcaaggtcagttttgaaaaatgattttc-ctgctagcataatccctttagtttc |
117 |
Q |
| |
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||||| ||||||||||||||||||||||||| || || || |||| | ||| | |||||||||||||||||| |||| ||| ||| | | ||||| | |
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| T |
42163020 |
gaatcatgctgagaatggggaatgacaacatcctggataacaaagcttaagttttgttttgaaaaatgattttttctgcaagcgtaaatcatgtagttgc |
42162921 |
T |
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| Q |
118 |
ccttctctccttaagactcgaagtacattcctggcagcggttgagagtgacttgcctaagcccatgaattcgcgaatccaaccgcagttaagatgaccga |
217 |
Q |
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||||| || | |||||| ||| |||||||||| | | ||||||||||||| || |||||||| ||||||| ||||| ||||||||||||||||| | |
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| T |
42162920 |
ccttcactgcataagacccgatgtacattcctaacggtggttgagagtgacccgcttaagcccacaaattcgcaaatccggccgcagttaagatgaccaa |
42162821 |
T |
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| Q |
218 |
actaaggtgtaatgtatgctagatacaatttataaattgaattttgaagatgttcttttgaaaactgaatttatcaagttatttcttgaatttggaaagt |
317 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
42162820 |
actaaggtgtaatttatgctagatacaatttacaaattgaattttgaacaatttcttttgaaaaatgaatttctcaagttttttcttgaatttggaaagt |
42162721 |
T |
|
| Q |
318 |
aaagaagattatgatcata |
336 |
Q |
| |
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|| |||||||||||||||| |
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| T |
42162720 |
aaggaagattatgatcata |
42162702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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