View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_56 (Length: 409)
Name: NF16091_low_56
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_56 |
 | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 2358217 - 2357837
Alignment:
| Q |
19 |
tacatagtttcgtagcaattaacagacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2358217 |
tacatagtttcgtagcaattaacagacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaa |
2358118 |
T |
|
| Q |
119 |
taggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatcct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
2358117 |
taggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatatttcaggacaaatcct |
2358018 |
T |
|
| Q |
219 |
tctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
2358017 |
tctaccacttccaaatggtaacaactcaaagtgacaccctcgaacatcaacatctttataagtgttaagaaatctttctggtttaaactttaatggatcc |
2357918 |
T |
|
| Q |
319 |
gaccaaacattatggtctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatg |
399 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357917 |
gaccaaacattatggtctgtttggattttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatg |
2357837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 42 - 397
Target Start/End: Complemental strand, 2340425 - 2340070
Alignment:
| Q |
42 |
agacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaataggctcactcgatgaatacaag |
141 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||||||||| ||| |||||||| |||| ||||||||| || ||| | || || ||| |
|
|
| T |
2340425 |
agacaaacgtggtttaatgagaatctcaagtggagtagctttggaattcgttgatccaaaggcttcactcatatcaacagcatcaggtgttggatttaag |
2340326 |
T |
|
| Q |
142 |
atttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaaca |
241 |
Q |
| |
|
|| ||||| |||||||||||| |||| | | ||||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||| | |
|
|
| T |
2340325 |
atatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttccttctaccacttccaaatggtaata |
2340226 |
T |
|
| Q |
242 |
actcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttg |
341 |
Q |
| |
|
||||| |||| |||| |||||||||| ||||||||||| ||| ||| ||||| ||||| |||||||||||||| | ||||||| || | |||||||| |
|
|
| T |
2340225 |
gttcaaaatgattacctctaacatcaacagctttatgagtggtaaaaaacctttctggtttgaactctaatggatctggccaaacactaggatctgtttg |
2340126 |
T |
|
| Q |
342 |
gatcttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
397 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||| || | ||||||||||| |
|
|
| T |
2340125 |
aatcttccaaagatttgtgattaatcgagttccctttataacttgataaccaccta |
2340070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 397
Target Start/End: Complemental strand, 2363441 - 2363154
Alignment:
| Q |
110 |
tcatatcaataggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctgg |
209 |
Q |
| |
|
||||||||||||| ||||| |||| || ||||||||||| |||||||||||| |||||||| ||||||||| ||||| || || || |||||||| || |
|
|
| T |
2363441 |
tcatatcaataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccggg |
2363342 |
T |
|
| Q |
210 |
acaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactct |
309 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||| |||| |||| || ||||| ||||||||| || ||||||| || || ||||| || || |
|
|
| T |
2363341 |
acaaatccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaatatctttatgcgttgtaagaaacctctccggtttgaatact |
2363242 |
T |
|
| Q |
310 |
aatggatccgaccaaacattatggtctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
397 |
Q |
| |
|
|||||||| |||||||||||| | || || || |||||||||||||| || |||| ||| ||||| ||| | |||||||| ||||||| |
|
|
| T |
2363241 |
aatggatctgaccaaacattaggatcagtgtgaatcttccaaagattcaaaattaatcgtgttccatttcttacatcatatccaccta |
2363154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 378
Target Start/End: Original strand, 2261198 - 2261434
Alignment:
| Q |
142 |
atttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaaca |
241 |
Q |
| |
|
|||||||| || || ||||||||||||||| ||||||| ||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2261198 |
atttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaaca |
2261297 |
T |
|
| Q |
242 |
actcaaagtgatg-ccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgttt |
340 |
Q |
| |
|
||||||| || || |||| | ||||||||| ||| |||||| ||||||||||||| ||||| |||||||||||||| | ||||| | | | || |||| |
|
|
| T |
2261298 |
actcaaaatgttgacccttg-gcatcaacatttttgtgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatacttggatcggttt |
2261396 |
T |
|
| Q |
341 |
ggatcttccaaagatttaagattagtcgagttcctttt |
378 |
Q |
| |
|
| || |||||||||||| ||| |||| |||||||||| |
|
|
| T |
2261397 |
gaattttccaaagatttgtgataagtctagttcctttt |
2261434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 395
Target Start/End: Complemental strand, 2351781 - 2351525
Alignment:
| Q |
139 |
aagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggta |
238 |
Q |
| |
|
||||| ||||| |||||||||||| | || | | | ||||||| |||| ||||||||||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
2351781 |
aagatatcaaaggaatgcaaaaaacttgctagagtgaaatgcacaatttgaagtccaaaagatattgcaggacacttccttctaccacttccaaatggta |
2351682 |
T |
|
| Q |
239 |
acaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgt |
338 |
Q |
| |
|
| ||||| |||| |||| |||||||||| ||||||||||| ||||||| ||||| ||||| |||||||||||||| ||||||||| || | || || |
|
|
| T |
2351681 |
gtagttcaaaatgattacctctaacatcaacaactttatgagtggtaagaaacctttctggtttgaactctaatggatctgaccaaacactaggatcagt |
2351582 |
T |
|
| Q |
339 |
ttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacc |
395 |
Q |
| |
|
||| |||||||||||||||| |||| |||||||||||| | |||| |||||||| |
|
|
| T |
2351581 |
ttgaatcttccaaagatttagcattaaccgagttccttttctaacatggtaaccacc |
2351525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 139 - 397
Target Start/End: Complemental strand, 2307647 - 2307389
Alignment:
| Q |
139 |
aagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggta |
238 |
Q |
| |
|
||||| ||||| |||||||||||| |||| | ||| ||||||| ||||| ||||||| |||||||| || || ||||||||||||||||||||||| | |
|
|
| T |
2307647 |
aagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatccttctaccacttccaaatggca |
2307548 |
T |
|
| Q |
239 |
acaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgt |
338 |
Q |
| |
|
| | | |||| | | || | |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | ||||| |||| | || || |
|
|
| T |
2307547 |
atagcacaaaattactacccctaacatcaacatctttatgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatattaggatccgt |
2307448 |
T |
|
| Q |
339 |
ttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
397 |
Q |
| |
|
| ||| ||||||||||| ||||| ||||||||| ||||| |||| |||||| |||| |
|
|
| T |
2307447 |
gttaatcctccaaagatttgtgattaatcgagttccctttataacatgataacctccta |
2307389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 2369277 - 2369019
Alignment:
| Q |
20 |
acatagtttcgtagcaattaacagacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaat |
119 |
Q |
| |
|
||||| |||| |||||||| |||||||| ||| |||| ||||||||||| || || | ||||| | || |||||||| ||| ||||||||||| |
|
|
| T |
2369277 |
acataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaat |
2369178 |
T |
|
| Q |
120 |
aggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatcctt |
219 |
Q |
| |
|
||| ||||| |||| || ||||||||||| |||||||||||| |||||||| ||||||||| ||||| || ||||| || ||||| || ||||||||| |
|
|
| T |
2369177 |
aggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattccagggcaaatcctt |
2369078 |
T |
|
| Q |
220 |
ctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatg |
278 |
Q |
| |
|
||||||| |||||||||||| | |||||| ||||| |||| ||||||||| |||||||| |
|
|
| T |
2369077 |
ctaccacctccaaatggtaatagctcaaaatgatgacctctaacatcaacgtctttatg |
2369019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 350
Target Start/End: Original strand, 14711309 - 14711465
Alignment:
| Q |
194 |
caaaagatattcctggacaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatct |
293 |
Q |
| |
|
|||| |||||||| ||||| |||||||| ||||||||||||||||| | |||||| |||| |||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
14711309 |
caaaggatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaacatcaacatctttatgagttgtaagaaatct |
14711408 |
T |
|
| Q |
294 |
ttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttcca |
350 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||| || | || |||||||||||||| |
|
|
| T |
14711409 |
ctcaggtttgaactccaatggatccggccaaacactaggatcagtttggatcttcca |
14711465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 193 - 350
Target Start/End: Original strand, 14753379 - 14753536
Alignment:
| Q |
193 |
ccaaaagatattcctggacaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatc |
292 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| ||||||||| |
|
|
| T |
14753379 |
ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc |
14753478 |
T |
|
| Q |
293 |
tttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttcca |
350 |
Q |
| |
|
| |||| || ||||| |||||||||| |||||| || |||| |||||||||||||| |
|
|
| T |
14753479 |
tcccaggcttgaactccaatggatccggccaaacgctagggtcagtttggatcttcca |
14753536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 2297472 - 2297361
Alignment:
| Q |
215 |
tccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatgg |
314 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| | || || | || |||||||||||| | |||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
2297472 |
tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgttagtggtaagaaacctttcaggtttaaattctaatgg |
2297373 |
T |
|
| Q |
315 |
atccgaccaaac |
326 |
Q |
| |
|
||| |||||||| |
|
|
| T |
2297372 |
atctgaccaaac |
2297361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 140 - 397
Target Start/End: Complemental strand, 4306109 - 4305852
Alignment:
| Q |
140 |
agatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaa |
239 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| |||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4306109 |
agatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatttgaaggccataagatattcctggacaaatccttctaccacttccaaatggtaa |
4306010 |
T |
|
| Q |
240 |
caactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtt |
339 |
Q |
| |
|
|||||||| ||||| || |||||||||| |||||||||| ||||||| | ||| ||||| |||||||| || || ||||||| ||| | || || |
|
|
| T |
4306009 |
taactcaaaatgatgacccttaacatcaacacctttatgagtagtaagaaaccgttctggtttgaactctaaaggttctaaccaaaccttaggatcagta |
4305910 |
T |
|
| Q |
340 |
tggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
397 |
Q |
| |
|
||||||||||| ||||| | |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
4305909 |
tggatcttccatagattcatgattagtctagttccttttttgacatcataaccaccta |
4305852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 397
Target Start/End: Original strand, 5804059 - 5804414
Alignment:
| Q |
42 |
agacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaataggctcactcgatgaatacaag |
141 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| ||||||||| || |||||||| |||| |||||||||||| | ||| | || || ||| |
|
|
| T |
5804059 |
agacaaacgtggtttaatgagaatttcaagtggagtagctttgctatttgttaatccaaattcttcagtcatatcaataagttcaggtgttggatttaag |
5804158 |
T |
|
| Q |
142 |
atttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaaca |
241 |
Q |
| |
|
|| ||||| |||||||||||| |||| | | | ||||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
5804159 |
atatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatattccaggacatttccttctaccacttccaaatggttgta |
5804258 |
T |
|
| Q |
242 |
actcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttg |
341 |
Q |
| |
|
||||| |||| || | |||||||| |||||||||||| ||||||| ||||| || ||||| |||||||||| | ||||||| || | |||||||| |
|
|
| T |
5804259 |
gttcaaaatgattacccctaacatcaatatctttatgagttgtaagaaacctttctggcttaaaatctaatggatttggccaaacactaagatctgtttg |
5804358 |
T |
|
| Q |
342 |
gatcttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
397 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
5804359 |
gatcttccaaagatttgtgattaatcgagttccttttgtaacatgataaccaccta |
5804414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 193 - 350
Target Start/End: Complemental strand, 684 - 528
Alignment:
| Q |
193 |
ccaaaagatattcctggacaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatc |
292 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| ||||||||| |
|
|
| T |
684 |
ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc |
585 |
T |
|
| Q |
293 |
tttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttcca |
350 |
Q |
| |
|
| |||| || ||||| |||||||||| || ||| || |||| |||||||||||||| |
|
|
| T |
584 |
tcccaggcttgaactccaatggatccggcc-aacgctagggtcagtttggatcttcca |
528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University