View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_57 (Length: 406)

Name: NF16091_low_57
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_57
NF16091_low_57
[»] chr3 (6 HSPs)
chr3 (76-401)||(9173409-9173749)
chr3 (18-207)||(9172264-9172430)
chr3 (119-185)||(23691618-23691684)
chr3 (119-185)||(23710057-23710123)
chr3 (119-185)||(23728513-23728579)
chr3 (119-185)||(23746969-23747035)
[»] chr2 (2 HSPs)
chr2 (237-398)||(2203607-2203768)
chr2 (96-198)||(2206190-2206292)
[»] chr7 (5 HSPs)
chr7 (237-398)||(15897257-15897418)
chr7 (116-207)||(31238850-31238941)
chr7 (101-199)||(8578566-8578664)
chr7 (71-125)||(31238941-31238995)
chr7 (116-196)||(15894718-15894798)
[»] chr5 (4 HSPs)
chr5 (237-398)||(18860714-18860875)
chr5 (116-175)||(34607123-34607182)
chr5 (96-198)||(18861707-18861809)
chr5 (116-186)||(2358601-2358671)
[»] chr1 (5 HSPs)
chr1 (255-398)||(24319779-24319922)
chr1 (116-197)||(29406841-29406922)
chr1 (116-190)||(44289380-44289454)
chr1 (117-190)||(27789319-27789392)
chr1 (97-146)||(45517340-45517389)
[»] chr6 (3 HSPs)
chr6 (71-206)||(28844792-28844927)
chr6 (236-285)||(28654247-28654296)
chr6 (73-125)||(18101442-18101494)
[»] chr8 (3 HSPs)
chr8 (268-398)||(12298013-12298143)
chr8 (71-125)||(1283317-1283371)
chr8 (71-125)||(8744260-8744314)
[»] chr4 (4 HSPs)
chr4 (117-190)||(51682021-51682094)
chr4 (73-125)||(1994791-1994843)
chr4 (98-150)||(30164152-30164205)
chr4 (89-125)||(1995523-1995559)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 76 - 401
Target Start/End: Complemental strand, 9173749 - 9173409
Alignment:
Q  76 tatatgtagagagcatatactatgagaatgacattcttatatgagaatg---------aattacagccatcagattaaaataaagagatgagattaaaac 166  Q
    ||||| || ||| |||||||||||||||||||||||||| |||||||||         ||||||| |||||| |||||||||||| || |||||||||||    
T  9173749 tatatatatagaacatatactatgagaatgacattcttacatgagaatggtgagaatgaattacatccatcaaattaaaataaagggacgagattaaaac 9173650  T
Q  167 atcatttaagttagtcatgtgccattctcattttccattcacacatgcacttacac------atgaattataagccccacaatctacacatgcactccac 260  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||      ||||||||||||||||||||||||||||||||||||||    
T  9173649 atcacttaagttagtcatgtgccattctcattttccattcacgcatacactcacactcacacatgaattataagccccacaatctacacatgcactccac 9173550  T
Q  261 aactccttctgaaatatataaaaaatttcatgaggataaacctctctagcatggttctctaaattcaggtgcatcttcaattctcgattagaatgaagtg 360  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  9173549 aactccttctaaaatatataaaaaatttcacgaggataaacttctctaccatgcttctctaaattcaggtgcatcttcaattctggattagaatgaagtg 9173450  T
Q  361 tattattctctgcaagaagttctttgtgtctctgtgctcct 401  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  9173449 tattattctctacaagaagttctttgtgtctctgtgctcct 9173409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 9172264 - 9172430
Alignment:
Q  18 aatgtcttgtcatgttttagtaaagtgcttaattttggtttgtaaaattaggaatatatatatgtagagagcatatactatgagaatgacattcttatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||           |    
T  9172264 aatgtcttgtcatgttttagtaaagtgcttaattttggtttgtaaaattaggaatatatatat----agaacatatactatgagaatg----------gt 9172349  T
Q  118 gagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgccattctcattttccattca 207  Q
    ||||||||||||||| |||         |||||| |||||||||||||||||| |||||||||||||||||||||  ||||| |||||||    
T  9172350 gagaatgaattacagtcat---------ataaagggatgagattaaaacatcacttaagttagtcatgtgccatttccatttcccattca 9172430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 23691684 - 23691618
Alignment:
Q  119 agaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatg 185  Q
    |||||||||| ||||||| |||||||||  ||| ||| |||||||||||  ||||||||||||||||    
T  23691684 agaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagttagtcatg 23691618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 23710123 - 23710057
Alignment:
Q  119 agaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatg 185  Q
    |||||||||| ||||||| |||||||||  ||| ||| |||||||||||  ||||||||||||||||    
T  23710123 agaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagttagtcatg 23710057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 23728579 - 23728513
Alignment:
Q  119 agaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatg 185  Q
    |||||||||| ||||||| |||||||||  ||| ||| |||||||||||  ||||||||||||||||    
T  23728579 agaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagttagtcatg 23728513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 23747035 - 23746969
Alignment:
Q  119 agaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatg 185  Q
    |||||||||| ||||||| |||||||||  ||| ||| |||||||||||  ||||||||||||||||    
T  23747035 agaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagttagtcatg 23746969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 237 - 398
Target Start/End: Complemental strand, 2203768 - 2203607
Alignment:
Q  237 ccacaatctacacatgcactccacaactccttctgaaatatataaaaaatttcatgaggataaacctctctagcatggttctctaaattcaggtgcatct 336  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||| ||||||||||||||| || ||||||||||||| |||||| |    
T  2203768 ccacaatctacacatgcactccacaactccttttgaaatatgtaaaagttttcatgagtataaacctctctagcgtgcttctctaaattcatgtgcatat 2203669  T
Q  337 tcaattctcgattagaatgaagtgtattattctctgcaagaagttctttgtgtctctgtgct 398  Q
    |||||||| |||||||||||||||||||||| || |||| ||||||||||||||| ||||||    
T  2203668 tcaattctggattagaatgaagtgtattattatcagcaaaaagttctttgtgtctttgtgct 2203607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 2206292 - 2206190
Alignment:
Q  96 tatgagaatgacattcttatatgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgccattctc 195  Q
    |||||||||| |||  ||||||||||||||||   |||| |||||||||||  ||  | ||||||||||  |||| |||||| ||||||||| |||||||    
T  2206292 tatgagaatggcatgtttatatgagaatgaatatgagccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacattctc 2206193  T
Q  196 att 198  Q
    |||    
T  2206192 att 2206190  T

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Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 237 - 398
Target Start/End: Original strand, 15897257 - 15897418
Alignment:
Q  237 ccacaatctacacatgcactccacaactccttctgaaatatataaaaaatttcatgaggataaacctctctagcatggttctctaaattcaggtgcatct 336  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||  |||| |||| ||||||||||||||| || ||||||||||||| ||||||||    
T  15897257 ccacaatctacacatgcactccacaactccttttgaaatatgtaaaagttttcgtgagtataaacctctctagcgtgcttctctaaattcatgtgcatct 15897356  T
Q  337 tcaattctcgattagaatgaagtgtattattctctgcaagaagttctttgtgtctctgtgct 398  Q
    |||||| | |||||||||||||||||||||| || |||| ||||||||||||||| ||||||    
T  15897357 tcaattatggattagaatgaagtgtattattatcagcaaaaagttctttgtgtctttgtgct 15897418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 31238941 - 31238850
Alignment:
Q  116 atgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgccattctcattttccattca 207  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||| |||| | |||||||    
T  31238941 atgagaatgaattacaaccatcagattaaaataaagggatgagattaaaacatcacttaagtgagtcatgtgctattgtcatgtgccattca 31238850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 8578566 - 8578664
Alignment:
Q  101 gaatgacattcttatatgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgccattctcattt 199  Q
    |||||||||| || ||||||||||||| | | || |||||||||||  ||| ||||| |||||||||| | |||||||||||||||| |||||||||||    
T  8578566 gaatgacattgttttatgagaatgaataataaccttcagattaaaaggaagggatgaaattaaaacataacttaagttagtcatgtgtcattctcattt 8578664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 31238995 - 31238941
Alignment:
Q  71 atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatga 125  Q
    |||||||||| || | | |||||  ||||||||||||||||||||||||||||||    
T  31238995 atatatatatatatataacatatcatatgagaatgacattcttatatgagaatga 31238941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 15894718 - 15894798
Alignment:
Q  116 atgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgccattctca 196  Q
    ||||||||||||   |||| |||||||||||  ||  | ||||||||||  |||| |||||||||||||||| ||||||||    
T  15894718 atgagaatgaatatgagccttcagattaaaaggaatggctgagattaaattatcacttaagttagtcatgtgtcattctca 15894798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 237 - 398
Target Start/End: Complemental strand, 18860875 - 18860714
Alignment:
Q  237 ccacaatctacacatgcactccacaactccttctgaaatatataaaaaatttcatgaggataaacctctctagcatggttctctaaattcaggtgcatct 336  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||||  |||| |||| ||||||||||||||| |||||||||||||||| ||||||||    
T  18860875 ccacaatctacacatgcactccacaacttcttttgaaatatgtaaaagttttcgtgagtataaacctctctagcgtggttctctaaattcatgtgcatct 18860776  T
Q  337 tcaattctcgattagaatgaagtgtattattctctgcaagaagttctttgtgtctctgtgct 398  Q
    |||||||| |||||||||||||||||||||| |  |||| ||||||||||||||| ||||||    
T  18860775 tcaattctggattagaatgaagtgtattattattagcaaaaagttctttgtgtctttgtgct 18860714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 34607123 - 34607182
Alignment:
Q  116 atgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaa 175  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  34607123 atgagaatgaattacagccatcaaattaaaataaagggatgagattaaaacatcacttaa 34607182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 18861809 - 18861707
Alignment:
Q  96 tatgagaatgacattcttatatgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgccattctc 195  Q
    |||||||||| |||  ||||||||||||||||   |||| |||||||||||  ||  | | ||||||||  |||| |||||| |||||||||||||||||    
T  18861809 tatgagaatggcatgtttatatgagaatgaatatgagccttcagattaaaaggaatggctaagattaaattatcacttaagtcagtcatgtgccattctc 18861710  T
Q  196 att 198  Q
    |||    
T  18861709 att 18861707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 2358601 - 2358671
Alignment:
Q  116 atgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgt 186  Q
    |||||||| ||||||| ||||||||||||||  ||  ||||||||||||||| || |||||| | ||||||    
T  2358601 atgagaataaattacacccatcagattaaaagcaatggatgagattaaaacaacacttaagtgactcatgt 2358671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 255 - 398
Target Start/End: Complemental strand, 24319922 - 24319779
Alignment:
Q  255 ctccacaactccttctgaaatatataaaaaatttcatgaggataaacctctctagcatggttctctaaattcaggtgcatcttcaattctcgattagaat 354  Q
    |||||||||||||| |||||||| |||||  |||| |||| ||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||    
T  24319922 ctccacaactccttttgaaatatgtaaaatttttcgtgagtataaacctctctagcgtgcttctctaaattcatgtgcatcttcaattctggattagaat 24319823  T
Q  355 gaagtgtattattctctgcaagaagttctttgtgtctctgtgct 398  Q
    ||||||||||||| || |||| |||||||||||| || ||||||    
T  24319822 gaagtgtattattatcagcaaaaagttctttgtgcctttgtgct 24319779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 29406841 - 29406922
Alignment:
Q  116 atgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgccattctcat 197  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||||| ||| ||||    
T  29406841 atgagaatgaattacagccatcagattaaaataaagggatgagattaaaacatcacttaaatgagtcatgtgctattgtcat 29406922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 44289380 - 44289454
Alignment:
Q  116 atgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgcca 190  Q
    |||||||| |||||||||| |||||||||||  ||  | |||||||||||||||| |||||| | ||||||||||    
T  44289380 atgagaataaattacagccgtcagattaaaaataatgggtgagattaaaacatcacttaagtgactcatgtgcca 44289454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 27789392 - 27789319
Alignment:
Q  117 tgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgcca 190  Q
    ||||||| |||| |||||||| ||||||||  ||  ||| |||||||||||||| |||||| | ||||||||||    
T  27789392 tgagaataaattgcagccatcggattaaaaacaatggattagattaaaacatcacttaagtgactcatgtgcca 27789319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 45517340 - 45517389
Alignment:
Q  97 atgagaatgacattcttatatgagaatgaattacagccatcagattaaaa 146  Q
    ||||||||| |||| |||||||||||||||| | |||||||| |||||||    
T  45517340 atgagaatgtcatttttatatgagaatgaataagagccatcaaattaaaa 45517389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 28844927 - 28844792
Alignment:
Q  71 atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatca 170  Q
    |||||||||| |||||  |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  28844927 atatatatatatagaggacatatcatatgagaatgacattcttatatgagaatgaattacagccatcagattaaaataaagggttgagattaaaacatca 28844828  T
Q  171 tttaagttagtcatgtgccattctcattttccattc 206  Q
     |||| | |||||||||| ||| |||| | ||||||    
T  28844827 cttaaatgagtcatgtgctattgtcatgtgccattc 28844792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 28654247 - 28654296
Alignment:
Q  236 cccacaatctacacatgcactccacaactccttctgaaatatataaaaaa 285  Q
    ||||||||||||||||||||||||||||||| ||  |||||| |||||||    
T  28654247 cccacaatctacacatgcactccacaactccctccaaaatatttaaaaaa 28654296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 18101494 - 18101442
Alignment:
Q  73 atatatatgtagagagcatatactatgagaatgacattcttatatgagaatga 125  Q
    |||||||| |||||| |||||  ||||||||||||||  ||||||||||||||    
T  18101494 atatatatatagagaacatatcttatgagaatgacatctttatatgagaatga 18101442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 398
Target Start/End: Original strand, 12298013 - 12298143
Alignment:
Q  268 tctgaaatatataaaaaatttcatgaggataaacctctctagcatggttctctaaattcaggtgcatcttcaattctcgattagaatgaagtgtattatt 367  Q
    |||||||||| |||||| ||||||||| ||||| ||||||| |||| |||||||||| || ||||||||||||| || || ||||||||||||||  |||    
T  12298013 tctgaaatatgtaaaaattttcatgagtataaatctctctaccatgcttctctaaatccacgtgcatcttcaatgctggaatagaatgaagtgtagcatt 12298112  T
Q  368 ctctgcaagaagttctttgtgtctctgtgct 398  Q
     ||||| |||||||||||||| |||||||||    
T  12298113 atctgccagaagttctttgtgcctctgtgct 12298143  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 1283317 - 1283371
Alignment:
Q  71 atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatga 125  Q
    |||| ||||| |||||| |||||||||||||||||||  | ||||||||||||||    
T  1283317 atatctatatatagagaacatatactatgagaatgactattttatatgagaatga 1283371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 8744314 - 8744260
Alignment:
Q  71 atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatga 125  Q
    |||||||||| || || ||||||  | ||||||||||||||||||||||||||||    
T  8744314 atatatatatatatagggcatatcatgtgagaatgacattcttatatgagaatga 8744260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 51682021 - 51682094
Alignment:
Q  117 tgagaatgaattacagccatcagattaaaataaagagatgagattaaaacatcatttaagttagtcatgtgcca 190  Q
    ||||||| |||||||||||  |||||||||  ||| |||| ||||||||||| |  ||||||||||||||||||    
T  51682021 tgagaataaattacagccaatagattaaaagcaagggatgcgattaaaacataacctaagttagtcatgtgcca 51682094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 1994791 - 1994843
Alignment:
Q  73 atatatatgtagagagcatatactatgagaatgacattcttatatgagaatga 125  Q
    |||||||| |||||  ||||||||||||||||| |||| ||||||||||||||    
T  1994791 atatatatatagaggacatatactatgagaatgccatttttatatgagaatga 1994843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 30164205 - 30164152
Alignment:
Q  98 tgagaatgacattcttatatgagaatgaattacagccatc-agattaaaataaa 150  Q
    |||||||||||| |||||||||||||||||  |||||||| |||| ||||||||    
T  30164205 tgagaatgacatacttatatgagaatgaatctcagccatcaagatcaaaataaa 30164152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 1995559 - 1995523
Alignment:
Q  89 catatactatgagaatgacattcttatatgagaatga 125  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  1995559 catatactatgagaatgtcatttttatatgagaatga 1995523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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