View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_6 (Length: 684)
Name: NF16091_low_6
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Original strand, 10549117 - 10549782
Alignment:
| Q |
1 |
tgaagacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10549117 |
tgaagacaatcatgcttgcatgagaggatattgtgaatactgatacggaggaagcatatgttgataattgcaagcggttcaaaattgtgtgcgataaatt |
10549216 |
T |
|
| Q |
101 |
tcccaagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagtacaaacagtgctgaatctgcacacagccggttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
10549217 |
tcccaagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagtacaaacaatgctgaatttgcaaacagccggttgaa |
10549316 |
T |
|
| Q |
201 |
aaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttccttccag |
300 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10549317 |
aaagcatctgactagtagtatgagtgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttccttccag |
10549416 |
T |
|
| Q |
301 |
acgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctcgtagacg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10549417 |
acgagcattatcatgcttgaacagagattcaaaggaaagcttttgtggtctaggttgattcgaaacatattaaggaaagatttgcattatctcgtagacg |
10549516 |
T |
|
| Q |
401 |
atgttgattgagcagttgaacttggtacggataaatccaggtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattgaaga |
500 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
10549517 |
atgctgattgagcagttggacttggtacggataaatccaggtggttgtttgagttcgatcacttacggattgccatgtgtgtgtgcgattgcattgaaga |
10549616 |
T |
|
| Q |
501 |
tcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagggtgatatatatatgaaggataggaagga |
600 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10549617 |
tcaagaacaaaatccccatccgtttggatgaaatccacactcactggaagatgttgaggttcgagtatgagggtg--atatatatgaaggataggaagga |
10549714 |
T |
|
| Q |
601 |
agacatctctctgttatcagaatgagatttgcttaaggtgttttttattaaaaccgtgttaggttctg |
668 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||| |||||| |
|
|
| T |
10549715 |
agacatctctctgttaccagaatgagatttgcttcaggtgtattttacaaaaaccgtgttaagttctg |
10549782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 166 - 579
Target Start/End: Original strand, 5959956 - 5960372
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
||||| || ||||||| |||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
5959956 |
acaaatagagctgaatttgcacacaaccggttgaaaaagtatatgactagtagcatgagtgatttaagtacaaactataaatccgttcacaacatgttag |
5960055 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaa |
365 |
Q |
| |
|
| ||| |||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | ||||||| ||||||||||||||| |
|
|
| T |
5960056 |
tgtcacaccatactcaaatacacgcttccttttagacgagcattatcatgcttgaacatagattcaaaagaaaattgttgtggtctaggttgattcgaaa |
5960155 |
T |
|
| Q |
366 |
catattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcact |
463 |
Q |
| |
|
||||| ||| || |||||||||||||| ||| || | |||| ||||||||| | |||| ||||||||| || |||||||||||| || ||||||| |
|
|
| T |
5960156 |
catatcaagaaacgctttgcattatctcgcagatgaggctgatcgagcagttggtgtcggtatggataaatcaaggtgtggttgtttgaatttgatcact |
5960255 |
T |
|
| Q |
464 |
tacggattgccatgtgcgggtgcgattgcattgaagatcaagaac-aaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttc |
562 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||||||||||| | |||| |||||||||||||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
5960256 |
ttcagattgccatgtgcgtgtgcgattgcattgaagatcaagagcaaaaaaccccatccgtttggataaaatccacactcactaaaagaggttgaggttc |
5960355 |
T |
|
| Q |
563 |
gagtatgagggtgatat |
579 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5960356 |
gaatatgagggtgatat |
5960372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 177 - 644
Target Start/End: Complemental strand, 16766403 - 16765937
Alignment:
| Q |
177 |
tgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagcta----ca |
272 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||||| | || |
|
|
| T |
16766403 |
tgaatctgcatacaaccggttgaaaaactatctgactaacatcatgggtgatttaagtacaaactgggaatccgttcacgacatgctagagtcagtcaca |
16766304 |
T |
|
| Q |
273 |
acatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatatta |
372 |
Q |
| |
|
||||||||| | || ||||||||||||||||||||||||||||||||| |||||||| | ||||| ||| |||| || ||||||| |||||||| | |
|
|
| T |
16766303 |
acatactcacacacgcgtttccttccagacgagcattatcatgcttgaacatagattcaatggaaagcgtttatggtctaacttgattcaaaacatatca |
16766204 |
T |
|
| Q |
373 |
aggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccaggt--ggttgtttgagttcgatcacttacggat |
470 |
Q |
| |
|
|| ||| |||||||||| ||| |||||| | ||| ||||| | || | || ||||||||||||| | |||||||||||| |||||||| ||||| |
|
|
| T |
16766203 |
agaaaagttttgcattatatcgcagacgaggccgatcgagcactcgatatcggaacggataaatccaaatttggttgtttgagtcagatcactttcggat |
16766104 |
T |
|
| Q |
471 |
tgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatga |
570 |
Q |
| |
|
|| | |||||| | | |||||||||||||||||||||||| | | |||| |||||||||||||| || ||| ||| |||||||||||||| ||||||| |
|
|
| T |
16766103 |
tgtcgtgtgcgtg-gtgattgcattgaagatcaagaacaacatcaccattcgtttggatgaaattcacacttactaaaagaggttgaggtttaagtatga |
16766005 |
T |
|
| Q |
571 |
gggtgatatatatatgaaggataggaaggaagacatctctctgttatcagaatgagatttgcttaaggtgtttt |
644 |
Q |
| |
|
|| || | |||||||||||||||||||||||||||||| || | |||| |||||||||| |||| |||| |
|
|
| T |
16766004 |
ggttg------acatgaaggataggaaggaagacatctctctgctaccggaataagatttgcttcaggtatttt |
16765937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 166 - 572
Target Start/End: Complemental strand, 45909476 - 45909068
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| ||| |||| |||||||||| |||||| |||||||||||| |||| ||| | |||||||||| |
|
|
| T |
45909476 |
acaaacagagctgaatctgcacacgctcggttgaaaaggtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttaataacatgctag |
45909377 |
T |
|
| Q |
266 |
agctacaacatact-cagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaa |
364 |
Q |
| |
|
|| | |||||||| ||| | || | ||| || || |||||||| || ||||||||||| || ||||||| |||| | ||||||| || |||||||| | |
|
|
| T |
45909376 |
agttgcaacataccgcag-tacatgtttcatttcaaacgagcataataatgcttgaacataggttcaaaggaaagttgttgtggtctaatttgattcgga |
45909278 |
T |
|
| Q |
365 |
acatattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccaggt--ggttgtttgagttcgatcac |
462 |
Q |
| |
|
|||| | |||| || ||| ||| ||||||||| || || |||| ||||| |||||||||||||||| | | ||||||||||||| |||||| |
|
|
| T |
45909277 |
acatttcaagggaagctttacatcatctcgtagtggagtacaataaagcacttgaaattggtacggataaatcaaaatatggttgtttgagtttgatcac |
45909178 |
T |
|
| Q |
463 |
ttacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttc |
562 |
Q |
| |
|
||||||||| || |||||| || ||||| |||||||| || ||| |||| || || ||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
45909177 |
ttacggattaccgtgtgcgtgtatgattgatttgaagataaaaaacggaaccgccctcagtttggatgaaattcacacccactggaagaggttgaggttc |
45909078 |
T |
|
| Q |
563 |
gagtatgagg |
572 |
Q |
| |
|
||||| |||| |
|
|
| T |
45909077 |
gagtacgagg |
45909068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 166 - 339
Target Start/End: Original strand, 50516904 - 50517077
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| |||| |||||||||| |||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
50516904 |
acaaacatagctgaatctgcacacgatcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctag |
50517003 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaag |
339 |
Q |
| |
|
|| | |||||||| | || ||||| || ||||||||||| || ||||||||||| || ||||||| |||| |
|
|
| T |
50517004 |
agttgcaacataccgcaatacatgcttcatttcagacgagcataataatgcttgaacataggttcaaaggaaag |
50517077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 177 - 565
Target Start/End: Complemental strand, 44711707 - 44711317
Alignment:
| Q |
177 |
tgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacat |
276 |
Q |
| |
|
||||||||||| | |||||||||||||| |||| |||||||||| | |||| |||||||||||| |||||||| | |||||||||||| | |||||| |
|
|
| T |
44711707 |
tgaatctgcactcgctcggttgaaaaagtacctgagtagtagtatgggtaatttgagtacaaactggcaatccgttaataacatgctagagttgcaacat |
44711608 |
T |
|
| Q |
277 |
actcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaagga |
376 |
Q |
| |
|
|| | || ||||| || ||||||||||| || ||||||||||| || ||||||| ||| | ||||||| | ||||| || | || | |||| |
|
|
| T |
44711607 |
accacaatacatgcttcatttcagacgagcataataatgcttgaacataggttcaaaggaaaattgttgtggtctcatttgatccggagaatttcaaggg |
44711508 |
T |
|
| Q |
377 |
aatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatc--caggtggttgtttgagttcgatcacttacggattgcc |
474 |
Q |
| |
|
|| ||| ||| ||||||||| || || |||| ||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||| | |
|
|
| T |
44711507 |
aagctttacatcatctcgtagtggagtacaataaagcacttgaaattggtacggataaatcaaaatgtggttgtttgagtttgatcacttacggattact |
44711408 |
T |
|
| Q |
475 |
atgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgag |
565 |
Q |
| |
|
||||| || ||||| |||||||| || ||| |||| || |||||||||||||||| || || |||| ||||||||||||||||||| |
|
|
| T |
44711407 |
gtgtgcatgtatgattggtttgaagataaaaaacggaaccgccctccgtttggatgaaattcacacccactagaagaggttgaggttcgag |
44711317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 572
Target Start/End: Original strand, 33803335 - 33803743
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||||| | ||| |||||||||| |||||| |||| ||||||| |||| ||||| |||||||||| |
|
|
| T |
33803335 |
acaaacagagctgaatctgcgcacgctcggttgaaaaagtgtttgagtagtagtatgggtgatttgagtaaaaactggaaatctgttcataacatgctag |
33803434 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaa |
365 |
Q |
| |
|
|| | |||||||| | || ||||| || ||||| ||||| || ||||||||||| || ||||||| |||| | ||||||| || |||| || || |
|
|
| T |
33803435 |
agttgcaacataccgcaatacatgcttcatttcagacaagcataataatgcttgaacataggttcaaaggaaagatgttgtggtctaatttgacccggaa |
33803534 |
T |
|
| Q |
366 |
catattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatc--caggtggttgtttgagttcgatcact |
463 |
Q |
| |
|
||| | |||| || || ||| ||||||||| || || |||| ||||| || |||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
33803535 |
catttcaagggaagcattacatcatctcgtagtggagtacaataaagcacttgaaattaatacggataaatcaaaatgtggttgtttgagtttgatcact |
33803634 |
T |
|
| Q |
464 |
tacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcg |
563 |
Q |
| |
|
|||| ||| || ||||| || ||||| ||||||||||||||| |||| | |||||||||| ||||| || || ||| ||||||||||| ||||| |
|
|
| T |
33803635 |
tacgaattaccgtgtgcatgtatgattggtttgaagatcaagaacggaaccaacttccgtttggaagaaattcacacccaccagaagaggttgaagttcg |
33803734 |
T |
|
| Q |
564 |
agtatgagg |
572 |
Q |
| |
|
|||| |||| |
|
|
| T |
33803735 |
agtacgagg |
33803743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 16766602 - 16766461
Alignment:
| Q |
1 |
tgaagacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatt |
100 |
Q |
| |
|
||||||| ||||||| |||||| |||||||| || |||||||||||||| || || ||||| ||||| || ||||||||| |||| ||||| |||| |
|
|
| T |
16766602 |
tgaagacgatcatgcgtgcatgggaggatattatggattctgatacggaaaaaacgtatgttgataattgtaaccggttcaaagttgtttgcgaaaaatg |
16766503 |
T |
|
| Q |
101 |
tcccaagtttgtataatatgttaaaagtacaattttgggtcc |
142 |
Q |
| |
|
| ||||||||| |||||||| ||||||| || |||||||| |
|
|
| T |
16766502 |
gcacaagtttgtggaatatgttgaaagtactatgttgggtcc |
16766461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 5959872 - 5959914
Alignment:
| Q |
124 |
aaagtacaattttgggtccgatgaaggagaagattgtgaagta |
166 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5959872 |
aaagtacaattttgggtccggtgaaggagaagattgtgaagta |
5959914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 166 - 586
Target Start/End: Complemental strand, 31044400 - 31043977
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgacta--gtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgct |
263 |
Q |
| |
|
|||||||| || |||| ||||||||| | ||||||||||||||| |||| |||||||| ||| ||||||||||| ||| | ||| |||||||||||| |
|
|
| T |
31044400 |
acaaacagagcagaatatgcacacagaccgttgaaaaagtatcttactatagtagtatgggtgaattaagtacaaaatggaactccactcacaacatgct |
31044301 |
T |
|
| Q |
264 |
agagctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcga |
363 |
Q |
| |
|
|||| |||||||||||| | || ||||||||| |||||||||| |||||||||||||| || ||||||| |||| | |||||| | |||||||||||| |
|
|
| T |
31044300 |
agagtcacaacatactcaaatacatgcttccttctagacgagcatgatcatgcttgaacataggttcaaaggaaagttgttgtggct-aggttgattcga |
31044202 |
T |
|
| Q |
364 |
aacatattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccaggtg--gttgtttgagttcgatca |
461 |
Q |
| |
|
|||||| |||||| |||||||||||||| | ||| |||||| ||| ||||| | ||||||||||||||| ||| ||||||| | || ||| |
|
|
| T |
31044201 |
aacataccaaggaacgctttgcattatctcgcaatcgaggttgatcgagtagttggttgtagtacggataaatccaagtgtggttgtttaattttcatcg |
31044102 |
T |
|
| Q |
462 |
cttacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggtt |
561 |
Q |
| |
|
||||| |||| ||||||||| || |||||||| |||||||||||||||| |||||||| |||||||||| ||||| ||||||| || |||||||| ||| |
|
|
| T |
31044101 |
cttacagatttccatgtgcgtgtacgattgcaatgaagatcaagaacaacacccccatttgtttggatgacatccacactcactagatgaggttgaagtt |
31044002 |
T |
|
| Q |
562 |
cgagtatgagggtgatatatatatg |
586 |
Q |
| |
|
|||||| ||||||||| ||| |||| |
|
|
| T |
31044001 |
cgagtaagagggtgatctatttatg |
31043977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 166 - 645
Target Start/End: Complemental strand, 31059742 - 31059268
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgacta--gtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgct |
263 |
Q |
| |
|
|||||||| || |||| |||||| || ||||||||||||||||| |||| |||||||| ||| ||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
31059742 |
acaaacagagcagaatatgcacatagacggttgaaaaagtatcttactatagtagtatgggtgaattaagtacaaaatggaactccgttcacaacatgct |
31059643 |
T |
|
| Q |
264 |
agagctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcga |
363 |
Q |
| |
|
|| |||||||||||| | || |||||||||||||||||||| |||||||||||||| || ||||||| |||| | |||||| ||||||||||| | |
|
|
| T |
31059642 |
agtc--acaacatactcaaatacatgcttccttccagacgagcatgatcatgcttgaacataggttcaaaggaaagttgttgtgg-ctaggttgattcaa |
31059546 |
T |
|
| Q |
364 |
aacatattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatcca--ggtggttgtttgagttcgatca |
461 |
Q |
| |
|
|||||| |||||| |||||||||||| | | ||| |||||| || || || | |||||||||||| || |||||||||| | || ||| |
|
|
| T |
31059545 |
aacataccaaggaacgctttgcattatcttgcaatcgaggttgatcaagtaggtggttgtagtacggataaatacaagtgtggttgtttaattttcatcg |
31059446 |
T |
|
| Q |
462 |
cttacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggtt |
561 |
Q |
| |
|
||||| |||| ||||||||| || | |||||| |||||||||||||||| |||||||| |||||||||| ||||| ||||||| || |||||||||||| |
|
|
| T |
31059445 |
cttacagatttccatgtgcgtgtacaattgcaatgaagatcaagaacaacacccccatttgtttggatgacatccacactcactagatgaggttgaggtt |
31059346 |
T |
|
| Q |
562 |
cgagtatgagggtgatatatatatgaaggataggaaggaagacatctctctgttatcagaatgagatttgcttaaggtgttttt |
645 |
Q |
| |
|
|||||| ||||||| || | ||||||| ||||| |||||||||| ||||| || ||| |||||||||| |||| ||||| |
|
|
| T |
31059345 |
cgagtaagagggtg------atcttaaggataagaaggcagacatctctatgttaccataataagatttgcttcaggtattttt |
31059268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 166 - 577
Target Start/End: Complemental strand, 31049055 - 31048642
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgacta--gtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgct |
263 |
Q |
| |
|
|||||||| || |||| ||||||||| ||||| ||||||||||| |||| |||||||| ||| ||||||||||| ||| | ||| ||||||||||||| |
|
|
| T |
31049055 |
acaaacagagcagaatatgcacacagacggttaaaaaagtatcttactatagtagtatgggtgaattaagtacaaaatggaactccattcacaacatgct |
31048956 |
T |
|
| Q |
264 |
agagctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcga |
363 |
Q |
| |
|
|||| |||||||||||| | || ||||||||| ||||||||| |||||||||||||| || ||||||| |||| | ||||| ||||||||||||| |
|
|
| T |
31048955 |
agagtcacaacatactcaaatacattcttccttccggacgagcatgatcatgcttgaacataggttcaaaggaaagttgatgtgg-ctaggttgattcga |
31048857 |
T |
|
| Q |
364 |
aacatattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccaggtg--gttgtttgagttcgatca |
461 |
Q |
| |
|
||||||| |||||| |||||||||||| | | ||| |||||| ||| ||||| | ||||||||||||||| ||| ||||||| | || ||| |
|
|
| T |
31048856 |
aacatatcaaggaacgctttgcattatcttgcaatcgaggttgatcgagtagttggttgtagtacggataaatccaagtgtcgttgtttaattttcatcg |
31048757 |
T |
|
| Q |
462 |
cttacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggtt |
561 |
Q |
| |
|
||||| ||| ||||||||| | ||||||| ||||||||||| |||| |||||||| |||||||||| ||||| ||||||| || |||||||||||| |
|
|
| T |
31048756 |
cttacaaatttccatgtgcgtttatgattgcaatgaagatcaag-acaacacccccatttgtttggatgacatccacactcactagatgaggttgaggtt |
31048658 |
T |
|
| Q |
562 |
cgagtatgagggtgat |
577 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
31048657 |
ggagtaagagggtgat |
31048642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 196 - 572
Target Start/End: Complemental strand, 34832518 - 34832140
Alignment:
| Q |
196 |
ttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttcct |
295 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| |||||||||||| |||||||||| |||||||||||| | |||||||| | || ||||| | |
|
|
| T |
34832518 |
ttgaaaaagtacttgagtagtagtatgggagatttgagtacaaactggcaatccgttcataacatgctagagttgcaacataccgcaatacatgcttcat |
34832419 |
T |
|
| Q |
296 |
tccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctcgt |
395 |
Q |
| |
|
| || |||||||| || ||||||||||| || |||||| |||| | ||||||| || ||||| || ||||| | |||| || ||| ||| ||||||| |
|
|
| T |
34832418 |
ttcaaacgagcataataatgcttgaacataggttcaaatgaaagttgttgtggtctaatttgatccggaacatttcaagggaagctttacatcatctcgt |
34832319 |
T |
|
| Q |
396 |
agacgatgttgattgagcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgca |
493 |
Q |
| |
|
|| ||| || |||| ||||| ||||| |||||||||| | ||||||||||||||| ||||||||||||||| || |||||| || ||||| |
|
|
| T |
34832318 |
agtggattacaataaagcacttgaaattggtgcggataaatcaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggt |
34832219 |
T |
|
| Q |
494 |
ttgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagg |
572 |
Q |
| |
|
|||||||| || ||| |||| || |||||||||||||||| || || |||| ||||||||||||||||||||| |||| |
|
|
| T |
34832218 |
ttgaagataaaaaacggaaccgccctccgtttggatgaaattcacacccacttgaagaggttgaggttcgagtacgagg |
34832140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 441 - 567
Target Start/End: Original strand, 25762016 - 25762142
Alignment:
| Q |
441 |
gtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaac |
540 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || |||||| || ||||| ||||||||||| ||| |||| || |||||||||||||||| || || |
|
|
| T |
25762016 |
gtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagatcaaaaacggaaccgccctccgtttggatgaaattcacac |
25762115 |
T |
|
| Q |
541 |
tcactggaagaggttgaggttcgagta |
567 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25762116 |
ccactggaagaggttgaggttcgagta |
25762142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 411 - 572
Target Start/End: Complemental strand, 20235015 - 20234852
Alignment:
| Q |
411 |
agcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattgaagatcaagaac |
508 |
Q |
| |
|
|||| ||||| |||||||||||||||| | ||||||||||||||| |||||||||||| || || |||||| || ||||| ||||||||||||||| |
|
|
| T |
20235015 |
agcacttgaaattggtacggataaatcaaaatgtggttgtttgagtttgatcacttacgggttaccgtgtgcgtgtatgattggtttgaagatcaagaac |
20234916 |
T |
|
| Q |
509 |
aaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagg |
572 |
Q |
| |
|
|||| |||||| |||||| ||||| || || ||||| |||||||||||||||||||| |||| |
|
|
| T |
20234915 |
ggaaccaccatccttttggaagaaattcacacccactgaaagaggttgaggttcgagtacgagg |
20234852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 31049243 - 31049108
Alignment:
| Q |
16 |
ttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtata |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||| ||| ||||| |||||||| ||||||||| |||| ||| | |||||||| |||||||| | |
|
|
| T |
31049243 |
ttgcatgggaggatatcgtgaattctgatacagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccacaaatttcctaagtttgtgaa |
31049144 |
T |
|
| Q |
116 |
atatgttaaaagtacaattttgggtccgatgaagga |
151 |
Q |
| |
|
||||||| ||| || |||||||||| || ||||||| |
|
|
| T |
31049143 |
atatgttgaaaataaaattttgggttcggtgaagga |
31049108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 323
Target Start/End: Original strand, 38966534 - 38966691
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
||||| || ||||||| ||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||| || ||||||| ||||||||| |
|
|
| T |
38966534 |
acaaatagagctgaatatgcacacgctcggttgaaaaagtatctgagtagtagtatgggtgattttagtacaaactggaaagccgttcatgacatgctag |
38966633 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaaca |
323 |
Q |
| |
|
|| | |||||||| | || ||||| || ||||||||||||||||||||||||| |
|
|
| T |
38966634 |
agttgcaacataccgtaatacatgcttcgtttaagacgagcattatcatgcttgaaca |
38966691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 31044588 - 31044441
Alignment:
| Q |
16 |
ttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtata |
115 |
Q |
| |
|
||||||| |||||||||||||||| |||||| || ||| ||| ||||| |||||||| ||||||||| |||| ||| | |||||||| |||||| | | |
|
|
| T |
31044588 |
ttgcatgggaggatatcgtgaattttgatacagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccacaaatttcctaagtttttgaa |
31044489 |
T |
|
| Q |
116 |
atatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaa |
163 |
Q |
| |
|
||||||| ||| || |||||||||| || ||||||| |||||||||| |
|
|
| T |
31044488 |
atatgttgaaaatataattttgggttcggtgaaggaatagattgtgaa |
31044441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 303 - 575
Target Start/End: Original strand, 11633185 - 11633456
Alignment:
| Q |
303 |
gagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctcgtagacgat |
402 |
Q |
| |
|
|||||| |||||||||||||| | |||||| |||| | ||||||| || ||||||| ||| |||| |||||| |||||||||||||| | |||| |
|
|
| T |
11633185 |
gagcatgatcatgcttgaacatatgttcaaatgaaagttgttgtggtctatgttgattagaagcataacaaggaacactttgcattatctcgcaaacgag |
11633284 |
T |
|
| Q |
403 |
gttgattgagcagttgaacttggtacggataaatccaggtg--gttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattgaaga |
500 |
Q |
| |
|
|||||| ||||||||| || ||||| |||||| | ||| ||||||| | || |||| |||| |||| | |||||| || ||||||||||||||| |
|
|
| T |
11633285 |
gttgatcgagcagttgtgtgtgatacgggtaaatctaagtgtggttgtttaattttcatcatatacgaattgtcgtgtgcgtgtacgattgcattgaaga |
11633384 |
T |
|
| Q |
501 |
tcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagggtg |
575 |
Q |
| |
|
| || ||||| |||||| ||||||||||||||||| |||||| ||||||||||| |||||| ||||| |||| |
|
|
| T |
11633385 |
taaaaaacaac-cccccaaccgtttggatgaaatcc--actcacgggaagaggttgcagttcgaatatgatggtg |
11633456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 25761720 - 25761809
Alignment:
| Q |
178 |
gaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagag |
267 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||||||| |||||| |||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
25761720 |
gaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatggtagag |
25761809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 20235279 - 20235178
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||| ||| ||||| |||| |||||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
20235279 |
acaaacagagctgaatctgcacacgctcagttgaaaaagtaattgagtagtaatatgggtgatttgagtacaaactggcaatccgttcataacatactag |
20235180 |
T |
|
| Q |
266 |
ag |
267 |
Q |
| |
|
|| |
|
|
| T |
20235179 |
ag |
20235178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 31059931 - 31059795
Alignment:
| Q |
16 |
ttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtata |
115 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| || || ||| ||||| ||||| || ||||||||| |||| ||| | |||||||| || ||| | | |
|
|
| T |
31059931 |
ttgcatgggaggatatcatgaattctgatacagagcaaacatatgttgataattgtaaccggttcaaagttgtatgccacaaatttcctaaattttttga |
31059832 |
T |
|
| Q |
116 |
atatgtt-aaaagtacaattttgggtccgatgaagga |
151 |
Q |
| |
|
||||||| |||| ||||||||||||| || ||||||| |
|
|
| T |
31059831 |
atatgttgaaaaatacaattttgggttcggtgaagga |
31059795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 166 - 399
Target Start/End: Complemental strand, 25011100 - 25010867
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||| |||| |||||||||||| ||| |
|
|
| T |
25011100 |
acaaacatagctgaatttgcacacagccggttaaaaaagtatctgattagtagtatgagtaatttaagtacaaactggaaatctgttcacaacatgttag |
25011001 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaa |
365 |
Q |
| |
|
|| ||||| |||||||| | ||| | | ||| |||||||||| ||||||||| |||| || ||||||| ||| | ||||||| || ||||||| |||| |
|
|
| T |
25011000 |
agttacaatatactcagatacacacattgttctagacgagcatgatcatgcttaaacataggttcaaaggaaaattattgtggtctaagttgattagaaa |
25010901 |
T |
|
| Q |
366 |
catattaaggaaatatttgcattatctcgtagac |
399 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |
|
|
| T |
25010900 |
gatatcaaggaacgatttgcattatctcgtagac |
25010867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 166 - 572
Target Start/End: Original strand, 19217143 - 19217551
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||||||| ||| |||||||||| |||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
19217143 |
acaaacagagttgaatctgcacacgttcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctag |
19217242 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaa |
365 |
Q |
| |
|
|| | |||||||| | | ||||| || || |||||||| || ||||||||||| || ||||||| |||| | ||||||| || ||||| || || |
|
|
| T |
19217243 |
agttgcaacataccgcaataaatgcttcatttcatacgagcataataatgcttgaacataggttcaaaggaaagatgttgtggtctaatttgatccggaa |
19217342 |
T |
|
| Q |
366 |
catattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatc--caggtggttgtttgagttcgatcact |
463 |
Q |
| |
|
||| | || | || || ||| ||||||||| || || |||| ||||| |||||||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
19217343 |
catttcaaaggaagcattacatcatctcgtagtggagtacaataaagcacttgaaattggtacggataaatcaaaatgtggttgtttgagtttgatcact |
19217442 |
T |
|
| Q |
464 |
tacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcg |
563 |
Q |
| |
|
|||||||| || ||||| || ||||| ||||||||||||||| |||| || || ||||||| ||||| || || || ||||||||||||||||||| |
|
|
| T |
19217443 |
tacggattaccgtgtgcttgtatgattggtttgaagatcaagaacggaaccaccctctgtttggaagaaattcacacccattggaagaggttgaggttcg |
19217542 |
T |
|
| Q |
564 |
agtatgagg |
572 |
Q |
| |
|
|||| |||| |
|
|
| T |
19217543 |
agtacgagg |
19217551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 199 - 562
Target Start/End: Complemental strand, 41256056 - 41255691
Alignment:
| Q |
199 |
aaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttccttcc |
298 |
Q |
| |
|
|||||||| |||| |||||||||| |||||| |||||||||||| |||||||| | |||||||||||| | |||||||| | || ||||| || | |
|
|
| T |
41256056 |
aaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttaataacatgctagagttgcaacataccgcaatacatgcttcatttc |
41255957 |
T |
|
| Q |
299 |
agacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctcgtaga |
398 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||||| |||| | ||||||| || | ||| || ||||| | || | || ||| ||| ||||||||| |
|
|
| T |
41255956 |
agacgagcataataatgcttgaacataggttcaaaggaaagttgttgtggtctaattcgatccggaacatttcaatggaagttttacatcatctcgtagt |
41255857 |
T |
|
| Q |
399 |
cgatgttgattgagcagttgaacttggtacggataaatccaggt--ggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattg |
496 |
Q |
| |
|
|| || |||| ||||| |||||||||||||||| | | ||||||||||||| ||||||||||||||| || |||||| || ||||| ||| |
|
|
| T |
41255856 |
ggagtacaataaagcacttgaaattggtacggataaatcaaaatatggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttg |
41255757 |
T |
|
| Q |
497 |
aagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttc |
562 |
Q |
| |
|
|||||||| ||| ||| || |||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
41255756 |
aagatcaaaaacggaactgccctccgtttggatgaaattcacacccactggaagaggttgaggttc |
41255691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 194 - 567
Target Start/End: Original strand, 15892016 - 15892392
Alignment:
| Q |
194 |
ggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttc |
293 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||| | ||||||||| | |||||||| | || ||||| |
|
|
| T |
15892016 |
ggttgaaaaagtatctgagtagtagtatgggtgatttaagtacaaactggaaatccgttcatgagatgctagagttgcaacataccgcaatacatgcttc |
15892115 |
T |
|
| Q |
294 |
cttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctc |
393 |
Q |
| |
|
|| |||||||||||||||||||||||| | || |||| || |||| | || |||| || ||| | |||||| | |||| || ||||||| | ||| |
|
|
| T |
15892116 |
gtttcagacgagcattatcatgcttgaatataggttcagaggaaaggtgttatggtctaatgggatccaaaacatttcaagggaagctttgcatcacctc |
15892215 |
T |
|
| Q |
394 |
gtagacgatgttgattgagcagttgaacttggtacggataaat---ccaggtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgatt |
490 |
Q |
| |
|
|||| || || |||| || || ||||||||||||||| | |||||||||| |||| |||||||| |||||| || |||||| || |||| |
|
|
| T |
15892216 |
gtagtggagtacaataaagcacttcaaattggtacggataaataaaaaatgtggttgtttcagtttgatcacttccggattaccgtgtgcgtgtatgatt |
15892315 |
T |
|
| Q |
491 |
gcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagta |
567 |
Q |
| |
|
| | |||||||||||| ||| || ||| |||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
15892316 |
gattcgaagatcaagaatggcaccgccctccatttggatgaaattcacactcattggaagaggttgaggttcgagta |
15892392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 577
Target Start/End: Complemental strand, 25010742 - 25010687
Alignment:
| Q |
522 |
gtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagggtgat |
577 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
25010742 |
gtttggatgaaattcatactcactggaagaggttgtggttcgagtataaaggtgat |
25010687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 2273018 - 2273139
Alignment:
| Q |
298 |
cagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctcgtag |
397 |
Q |
| |
|
|||| |||||||||||||| |||||| || |||| || |||| ||| ||| | ||||||||| || ||||||| |||||| || ||| ||||||| || |
|
|
| T |
2273018 |
cagaggagcattatcatgcctgaacataggttcagaggaaaggtttcgtgatctaggttgatccggaacatatcaaggaacacttcgcactatctcgcag |
2273117 |
T |
|
| Q |
398 |
acgatgttgattgagcagttga |
419 |
Q |
| |
|
|||| ||||| |||||||||| |
|
|
| T |
2273118 |
acgagtttgatcgagcagttga |
2273139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 377
Target Start/End: Original strand, 42573378 - 42573530
Alignment:
| Q |
225 |
tgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacag |
324 |
Q |
| |
|
||||| ||||||||||| | |||| |||||||| ||| ||||| ||||||||||||| | |||| || || ||||||||||| || ||| ||||| |
|
|
| T |
42573378 |
tgattcaagtacaaactcgaaatctgttcacaagatgttagagtcacaacatactcagatacacgtgtcgtttcagacgagcatgataatggttgaagct |
42573477 |
T |
|
| Q |
325 |
agattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaa |
377 |
Q |
| |
|
|| || |||| ||| | ||||||| || ||||||| ||| |||||||||||| |
|
|
| T |
42573478 |
aggtttaaaggaaaaatattgtggtataagttgattagaagcatattaaggaa |
42573530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 8109414 - 8109483
Alignment:
| Q |
198 |
gaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagag |
267 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||| |||| ||| || |||||||||||||||| ||||| |
|
|
| T |
8109414 |
gaaaaagtatttgtatagtagtatgagtgatttatgtacgaaccaggcatccgttcacaacatgttagag |
8109483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 166 - 567
Target Start/End: Original strand, 30213492 - 30213895
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| |||| |||||||||| |||||| |||||||||||| |||| ||||| |||||| ||| |
|
|
| T |
30213492 |
acaaacagagctgaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttcataacatggtag |
30213591 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaa |
365 |
Q |
| |
|
|| | ||||||||| | || ||||| || ||||||||||| || ||||||||||| || ||||||| |||| | || |||| || ||||| || || |
|
|
| T |
30213592 |
agttgcaacatactgcaatacatgcttcatttcagacgagcataataatgcttgaacataggttcaaaggaaagttattttggtctaatttgatccggaa |
30213691 |
T |
|
| Q |
366 |
catattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatc--caggtggttgtttgagttcgatcact |
463 |
Q |
| |
|
||| | |||| || ||| ||| ||||| ||| || || |||| ||||| |||||||||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
30213692 |
catttcaagggaagctttacatcatctcctagtggagtacaataaagcacttgaatttggtacggataaatcaaaatgtggttgtttaagtttgatcact |
30213791 |
T |
|
| Q |
464 |
tacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcg |
563 |
Q |
| |
|
|||||||| || |||||| || ||||| ||||||||||| ||| |||| || ||| |||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
30213792 |
tacggattaccgtgtgcgtgtatgattggtttgaagatcaaaaacggaaccgccctccatttggatgaaattcacacccactggaagaggttgaggttcg |
30213891 |
T |
|
| Q |
564 |
agta |
567 |
Q |
| |
|
|||| |
|
|
| T |
30213892 |
agta |
30213895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 178 - 439
Target Start/End: Original strand, 26264401 - 26264660
Alignment:
| Q |
178 |
gaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacata |
277 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| || |||||||||||| |||| ||||| ||||||||| |
|
|
| T |
26264401 |
gaatatgcacacagcatgttgaaaaagtatctgactaatagtatgggcgattcaagtacaaacaggaaatccgttcacagcatg-tagagttacaacata |
26264499 |
T |
|
| Q |
278 |
ctcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaa |
377 |
Q |
| |
|
|| || | |||||||||||| |||||||||| |||||| ||||||| || |||||| |||| | | ||||| ||| |||||||||||||||| |||||| |
|
|
| T |
26264500 |
ctaagatacacgcttccttctagacgagcatgatcatgtttgaacataggctcaaag-aaagttgtcgtggtctagattgattcgaaacatatcaaggaa |
26264598 |
T |
|
| Q |
378 |
atatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatcca |
439 |
Q |
| |
|
|||||||||||||| | |||| |||| | ||||| ||| ||||||||||||||||| |
|
|
| T |
26264599 |
cactttgcattatctcgcaaacgaggttggtcgagcaattggttgtggtacggataaatcca |
26264660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 10925748 - 10925882
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| ||| |||||||||| | ||||| ||||||||||||| |||||||| || ||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
10925748 |
acaaacagagctaaatctgcacataaccggtcgaaaaagtatctggctagtagtgtgggtgatttaagtacaaactggaactccgttcacaacatgctag |
10925847 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccag |
300 |
Q |
| |
|
|| ||||||||||||| | ||||||||||||||| |
|
|
| T |
10925848 |
agtcacaacatactcagatacacgcttccttccag |
10925882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 166 - 572
Target Start/End: Original strand, 29809920 - 29810328
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||| ||| |||||||||| | |||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
29809920 |
acaaacagagctgaatctgcacacgctctgttgaaaaagtatttgagtagtagtatgggtcatttgagtacaaactggaaatccgttcataacatgctaa |
29810019 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaa |
365 |
Q |
| |
|
|| | |||||||| | || | ||| || || |||||||| || ||||||||||| || ||||||| |||| | ||||||| || ||||| || || |
|
|
| T |
29810020 |
agttgcaacataccgcaatacatgattcatttcatacgagcataataatgcttgaacataggttcaaaggaaagatgttgtggtctaatttgatccggaa |
29810119 |
T |
|
| Q |
366 |
catattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcact |
463 |
Q |
| |
|
||| | |||| || || ||| |||||||| || || |||| ||||| |||||||||||||||| | ||||||||||||||| ||||| | |
|
|
| T |
29810120 |
catttcaagggaagcattacatcatctcgtaatggagtacaataaagcacttgaaattggtacggataaatcaaaatgtggttgtttgagtttgatcatt |
29810219 |
T |
|
| Q |
464 |
tacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcg |
563 |
Q |
| |
|
|||||||| || |||||| || ||||| ||||||||||||||| |||| || |||||||||| ||||| || || |||||||||| ||||||||| | |
|
|
| T |
29810220 |
tacggattaccgtgtgcgtgtatgattgatttgaagatcaagaacgcaacctccctccgtttggaagaaattcacacccactggaagatgttgaggtttg |
29810319 |
T |
|
| Q |
564 |
agtatgagg |
572 |
Q |
| |
|
|||| |||| |
|
|
| T |
29810320 |
agtacgagg |
29810328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 175 - 572
Target Start/End: Complemental strand, 17311116 - 17310717
Alignment:
| Q |
175 |
gctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaac |
274 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| |||||||||| |||||| |||||||||| | |||||||||| ||||| |||||| | |||| |
|
|
| T |
17311116 |
gctgaatctgcacacgctcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactagcaatccgttcataacattctagagttgcaac |
17311017 |
T |
|
| Q |
275 |
atactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaag |
374 |
Q |
| |
|
|||| | || ||||| || ||||| ||||| || ||||||||||| || ||||||| |||| | ||||||| || ||||| || ||||| | ||| |
|
|
| T |
17311016 |
ataccgcaatacatgcttcatttcagacaagcataataatgcttgaacataggttcaaaggaaagatgttgtggtctaatttgatccggaacatttcaag |
17310917 |
T |
|
| Q |
375 |
gaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcacttacggattg |
472 |
Q |
| |
|
| || || ||| ||||||||| || || |||| ||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
17310916 |
ggaagcattacatcatctcgtagtggagtacaataaagcacttgaaattggtacggataaatcaaaatgtggttgtttgagtttgatcacttacggatta |
17310817 |
T |
|
| Q |
473 |
ccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagg |
572 |
Q |
| |
|
|| |||||| || || || ||||||||||||||| ||| || | ||||||| ||||| || || |||||||| ||||||||||||||||| |||| |
|
|
| T |
17310816 |
ccgtgtgcgtgtatgaatgatttgaagatcaagaacggtaccaccctatgtttggaagaaattcacacccactggaataggttgaggttcgagtacgagg |
17310717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 468 - 577
Target Start/End: Original strand, 10925990 - 10926099
Alignment:
| Q |
468 |
gattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagta |
567 |
Q |
| |
|
|||||||||||| | || |||||||||| |||||||||||||| |||| ||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
10925990 |
gattgccatgtgtgtgtacgattgcattaaagatcaagaacaacaccctcattcgtttggatgaaatccacacttattggaagaggttgaggttcgagta |
10926089 |
T |
|
| Q |
568 |
tgagggtgat |
577 |
Q |
| |
|
|||||||||| |
|
|
| T |
10926090 |
tgagggtgat |
10926099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 38621493 - 38621603
Alignment:
| Q |
168 |
aaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagag |
267 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||| |||| |||||||||| |||||| |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
38621493 |
aaacagagctgaatctgcacacactcggttgagaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagag |
38621592 |
T |
|
| Q |
268 |
ctacaacatac |
278 |
Q |
| |
|
| |||||||| |
|
|
| T |
38621593 |
ttgcaacatac |
38621603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 486 - 577
Target Start/End: Original strand, 26264667 - 26264758
Alignment:
| Q |
486 |
cgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagggtgat |
577 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
26264667 |
cgattgcattgaagatcaagaacaacacccccatctgggtggatgaaatccacactcactggaagaagttgcggttatagtatgagggtgat |
26264758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 26264189 - 26264350
Alignment:
| Q |
4 |
agacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcc |
103 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||| ||||| || ||| ||| ||||| |||||||| | |||||| |||| ||| | ||| || | |
|
|
| T |
26264189 |
agacagtcatgcttgaataggaggatatcgtgaattccgatacagagcaagcatatgttgataattgcaaccaattcaaagttgtatgcaaaaaaatttc |
26264288 |
T |
|
| Q |
104 |
caagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagt |
165 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
26264289 |
caagttttcataatatgttgaaaatacaattttgggtcaggtgaaggagatgattgtgaagt |
26264350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 23937592 - 23937528
Alignment:
| Q |
178 |
gaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactg |
242 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
23937592 |
gaatctgcacacactcggttgaaaaagtatctgaatagtagtatggatgatctaagtacaaactg |
23937528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 10925560 - 10925709
Alignment:
| Q |
16 |
ttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtata |
115 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| | || ||| ||||| |||||||| | |||||| |||| ||| | |||||||| |||||| | | |
|
|
| T |
10925560 |
ttgcatgggaggatatcgtgaattccgatacatagcaaccatatgttgataattgcaacctattcaaagttgtatgcaacaaatttcctaagtttttgga |
10925659 |
T |
|
| Q |
116 |
atatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagt |
165 |
Q |
| |
|
||||||| ||| | ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
10925660 |
atatgttgaaaatgaaattttgggtctgatgaaggagaaggttgtgaagt |
10925709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 21199068 - 21198977
Alignment:
| Q |
302 |
cgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctc |
393 |
Q |
| |
|
||||||| |||||||||||||| || ||||| | |||| | ||||||| || ||||||| ||||||||| || ||| ||||||||||||| |
|
|
| T |
21199068 |
cgagcatgatcatgcttgaacataggttcaacgaaaagttgttgtggtctaagttgattagaaacatatcaaagaacactttgcattatctc |
21198977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 17311284 - 17311174
Alignment:
| Q |
45 |
acggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtccga |
144 |
Q |
| |
|
||||| |||| |||| |||| ||||| || ||||||||| || | |||| ||||||||||||||| | |||||||| ||| |||||||||| |||| |
|
|
| T |
17311284 |
acggaggaagcatacattgataattggaaccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatccgg |
17311185 |
T |
|
| Q |
145 |
tgaaggagaag |
155 |
Q |
| |
|
| ||||||||| |
|
|
| T |
17311184 |
ttaaggagaag |
17311174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 166 - 572
Target Start/End: Complemental strand, 52971068 - 52970661
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||| || ||| |||||||||| |||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
52971068 |
acaaacagagctgaatctgcagacgctcggttgaaaaagcatttgagtagtagtatgggtgatttgagtacaaactggaaatccgtttgtaacatgctag |
52970969 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaa |
365 |
Q |
| |
|
|| | |||||||| | || ||||| || ||||||||||| || ||||||||||| || ||||||| |||| | ||||||| || ||||| || || |
|
|
| T |
52970968 |
agttgcaacataccgcaatacatgcttcatttcagacgagcataataatgcttgaacataggttcaaaggaaagatgttgtggtctaatttgatccggaa |
52970869 |
T |
|
| Q |
366 |
catattaaggaaatatttgcattatctcgtagacgatgttgattgagcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcact |
463 |
Q |
| |
|
||| | |||| || || ||| ||||||||| || || |||| ||||| ||||||| |||||||| | ||||||||||||||| ||||||| |
|
|
| T |
52970868 |
catttcaagggaagcattacatcatctcgtagtggagtacaataaagcaattgaaattggtacagataaatcaaaatgtggttgtttgagtttgatcact |
52970769 |
T |
|
| Q |
464 |
tacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcg |
563 |
Q |
| |
|
|||||||| || |||| | || ||||| ||||||||||||||| ||| || |||||||||| ||||| || || |||| ||||||||||||||| | |
|
|
| T |
52970768 |
tacggattaccgtgtg-gtgtatgattggtttgaagatcaagaacggtaccaccctccgtttggaagaaattcacacccactagaagaggttgaggtttg |
52970670 |
T |
|
| Q |
564 |
agtatgagg |
572 |
Q |
| |
|
|||| |||| |
|
|
| T |
52970669 |
agtacgagg |
52970661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 208 - 565
Target Start/End: Original strand, 48094747 - 48095106
Alignment:
| Q |
208 |
ctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttccttccagacgagca |
307 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||| |||||||| | |||||||||||| | |||||||| | || ||||| || || ||||||| |
|
|
| T |
48094747 |
ctgagtagtagtataggtgatttgagtacaaactggcaatccgttaataacatgctagagttgcaacataccgcaatacatgcttcatttcatacgagca |
48094846 |
T |
|
| Q |
308 |
ttatcatgcttgaacagagattcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctcgtagacgatgttga |
407 |
Q |
| |
|
| || ||||||||||| || |||||| |||| | ||||||| || ||||| || ||||| | |||| ||| ||| ||| ||||||||| || | |
|
|
| T |
48094847 |
taataatgcttgaacataggttcaaaagaaagttgttgtggtctaatttgatccggaacatttcaagggaatctttacatcatctcgtagtggagtacaa |
48094946 |
T |
|
| Q |
408 |
ttgagcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattgaagatcaag |
505 |
Q |
| |
|
| |||| ||||| ||||||| |||||||| | ||||||||||||||| ||||||||||||||| || |||||| || ||||| |||||||| || |
|
|
| T |
48094947 |
taaagcacttgaaattggtacagataaatcaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagataaaa |
48095046 |
T |
|
| Q |
506 |
aacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgag |
565 |
Q |
| |
|
|| |||| || |||||||||||||||| || || || ||||||||||||| ||||||| |
|
|
| T |
48095047 |
aatggaaccgccctccgtttggatgaaattcacacccattggaagaggttgatgttcgag |
48095106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 631
Target Start/End: Complemental strand, 25478947 - 25478838
Alignment:
| Q |
516 |
ccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagtatgagggtgatatatatatgaaggataggaaggaagacatctctctgtt |
615 |
Q |
| |
|
|||||| ||||||| ||||||| |||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
25478947 |
ccatccatttggattaaatccacactcaccagaacaggttgaggttcgagtatgagggtg------atacgaaggataggaaggacgacatctctctgtt |
25478854 |
T |
|
| Q |
616 |
atcagaatgagatttg |
631 |
Q |
| |
|
| | ||||| |||||| |
|
|
| T |
25478853 |
accggaatgggatttg |
25478838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 461 - 577
Target Start/End: Complemental strand, 5158581 - 5158465
Alignment:
| Q |
461 |
acttacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggt |
560 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||||||||| |||||| |||||||||||||||| || |||||| ||||||| ||| || |
|
|
| T |
5158581 |
acttacggattgttgtgtgcatgtgcgattgccaagaagatcaagaacaacacccccctccgtttggatgaaattcacactcaccggaagagattgttgt |
5158482 |
T |
|
| Q |
561 |
tcgagtatgagggtgat |
577 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
5158481 |
tcgaatatgaaggtgat |
5158465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 5158836 - 5158769
Alignment:
| Q |
193 |
cggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacat |
260 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||| ||| ||||||||| ||||||| |||||||| |
|
|
| T |
5158836 |
cggttgaaaaggtatctaactagtagtatgagtgatgtaattacaaactgaaaatccgtccacaacat |
5158769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 52971227 - 52971110
Alignment:
| Q |
45 |
acggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtccga |
144 |
Q |
| |
|
||||| ||||||||| |||| ||||| | ||||||||| || | |||| ||||||||||||||| | |||||||| ||| |||||||||| |||| |
|
|
| T |
52971227 |
acggaggaagtatacattgataattggacccggttcaaagttatatgcgcaaaatttcccaagtttttgaaatatgttgaaaagacaattttggatccgg |
52971128 |
T |
|
| Q |
145 |
tgaaggagaagattgtga |
162 |
Q |
| |
|
| ||||||||| |||||| |
|
|
| T |
52971127 |
tcaaggagaagtttgtga |
52971110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 5158952 - 5158904
Alignment:
| Q |
115 |
aatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaa |
163 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5158952 |
aatatgttgaaactgcaattttgggtccgatggaggagaaaattgtgaa |
5158904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 23255032 - 23255163
Alignment:
| Q |
441 |
gtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattgaagatcaagaacaaaacccccatccgtttggatgaaatccaaac |
540 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || |||||| || ||||| ||||||||||||||| |||| || | |||||||| ||||| || || |
|
|
| T |
23255032 |
gtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagatcaagaacggaaccacccttcgtttggaagaaattcacac |
23255131 |
T |
|
| Q |
541 |
tcactggaagaggttgaggttcgagtatgagg |
572 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
23255132 |
ccactggaagaggttgaggttcgagtacgagg |
23255163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 411 - 567
Target Start/End: Original strand, 756180 - 756338
Alignment:
| Q |
411 |
agcagttgaacttggtacggataaatccag--gtggttgtttgagttcgatcacttacggattgccatgtgcgggtgcgattgcattgaagatcaagaac |
508 |
Q |
| |
|
|||| ||||| |||||||||||||||| | |||| ||||| |||| |||||| |||||||| || ||||| || |||| | ||||||||||||||| |
|
|
| T |
756180 |
agcacttgaaattggtacggataaatcaaaatgtgggtgtttcagtttgatcacatacggattaccgtgtgcatgtatgattactttgaagatcaagaac |
756279 |
T |
|
| Q |
509 |
aaaacccccatccgtttggatgaaatccaaactcactggaagaggttgaggttcgagta |
567 |
Q |
| |
|
| ||| || ||||||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
756280 |
gacaccaccctccgtttcgatgaaattcacactcactggaagaggttgaggttcgagta |
756338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 349
Target Start/End: Complemental strand, 9139188 - 9139005
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| | ||||| ||||||| || |||||||||||| ||| ||||||||||| |||||| |||||||||||| |||| ||||| |||||||||| |
|
|
| T |
9139188 |
acaaacagagttgaatgtgcacacgctcgattgaaaaagtatttgagtagtagtatgagtgatttgagtacaaactggcaatctgttcataacatgctag |
9139089 |
T |
|
| Q |
266 |
agctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagagattcaaagtaaagcttttgtggt |
349 |
Q |
| |
|
|| | |||||||| | || | ||| || ||||||||||| || ||||||||||| || ||||||| |||| | ||||||| |
|
|
| T |
9139088 |
agttgcaacataccgcaatacatgtttcatttcagacgagcataataatgcttgaacataggttcaaagaaaagatgttgtggt |
9139005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 23254751 - 23254852
Alignment:
| Q |
166 |
acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag |
265 |
Q |
| |
|
|||||||| |||||||||| | || || |||| ||||||| ||| ||||||||| ||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
23254751 |
acaaacagagctgaatctgtagacgctcgattgagaaagtatttgagtagtagtatagatgatttgagtacaaactggcaatccgttcataacatgctag |
23254850 |
T |
|
| Q |
266 |
ag |
267 |
Q |
| |
|
|| |
|
|
| T |
23254851 |
ag |
23254852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 397
Target Start/End: Original strand, 755718 - 755888
Alignment:
| Q |
227 |
atttaagtacaaactgggaatccgttcacaacatgctagagctacaacatactcagctgcacgcttccttccagacgagcattatcatgcttgaacagag |
326 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||||||| || | |||||||| | || ||||| || |||||||||||||||||||||||||| |
|
|
| T |
755718 |
atttgagtacaaactgcaaatccgttcatgacatgctatagttgcaacataccgtaatacatgcttcgtttcagacgagcattatcatgcttgaacatca |
755817 |
T |
|
| Q |
327 |
attcaaagtaaagcttttgtggtttaggttgattcgaaacatattaaggaaatatttgcattatctcgtag |
397 |
Q |
| |
|
||||||| |||| | ||||||| || ||||||| ||||||| | |||| || ||||||| |||| |||| |
|
|
| T |
755818 |
gttcaaaggaaaggtgttgtggtctaagttgattggaaacatttcaagggaagttttgcatcatcttgtag |
755888 |
T |
|
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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 24132005 - 24131843
Alignment:
| Q |
1 |
tgaagacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatt |
100 |
Q |
| |
|
||||||| ||||||| |||||| |||||||| ||| ||||||||| ||||||| ||| ||||| ||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
24132005 |
tgaagacgatcatgcgtgcatgggaggatattgtggattctgatatggaagaaacatatgttgataattgcagccggttcaaagttgtttgcgaaaaatg |
24131906 |
T |
|
| Q |
101 |
tcccaagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaa |
163 |
Q |
| |
|
| ||||||||| ||||||| ||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
24131905 |
gctcaagtttgtggaatatgtagaaagtactattttgggtctaatcaaggagaagattgtgaa |
24131843 |
T |
|
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