View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_61 (Length: 392)
Name: NF16091_low_61
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 113 - 313
Target Start/End: Complemental strand, 42079012 - 42078812
Alignment:
| Q |
113 |
caggattaaaggattttccaaaccttcagttggagctgcttcgagacaaaacattttccaaacaatgtgaacatgttattcttttcaaaaattatagttc |
212 |
Q |
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| T |
42079012 |
caggattaaaggattttccaaaccttcagttggagctgcttggagacaaaacattttccaaaccatgtgaacatgttattcttttcaaaaattatagttc |
42078913 |
T |
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| Q |
213 |
agatgtataaaggttaaatggttaatgaagtttgtagatattagtgtctcacacgacttctatttcctataccagataatatctacatcaaagcttcgga |
312 |
Q |
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| T |
42078912 |
agatgtataaaggttaaatggttaatgaagtttgtagatattagtgtctcacacgacttctatttcctataccagataatatctacatcaaagcttcgga |
42078813 |
T |
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| Q |
313 |
a |
313 |
Q |
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| T |
42078812 |
a |
42078812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 42079142 - 42079042
Alignment:
| Q |
15 |
gcaaaggtacaactctaattcctggagtcaagtcaacagcacaaacagaggaaaatgtgggtgctcttggttggcgtctttcatcagaccagctgcttca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42079142 |
gcaaaggtacaactctaattcctggagtcaagtcaatagcaaaggcagaggaaaatttgggtgctcttggttggcgtctttcatcagaccagctgcttca |
42079043 |
T |
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| Q |
115 |
g |
115 |
Q |
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| T |
42079042 |
g |
42079042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 42081571 - 42081471
Alignment:
| Q |
15 |
gcaaaggtacaactctaattcctggagtcaagtcaacagcacaaacagaggaaaatgtgggtgctcttggttggcgtctttcatcagaccagctgcttca |
114 |
Q |
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|||||||||||| || |||||||||||||||||||| | ||||| ||||||||||| |||||||||| ||||||||||| || ||| || |||| ||||| |
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| T |
42081571 |
gcaaaggtacaattccaattcctggagtcaagtcaataacacaagcagaggaaaatttgggtgctctgggttggcgtctctcctcaaacgagctacttca |
42081472 |
T |
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| Q |
115 |
g |
115 |
Q |
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| |
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| T |
42081471 |
g |
42081471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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