View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_63 (Length: 389)
Name: NF16091_low_63
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 11975450 - 11975833
Alignment:
| Q |
1 |
gcaccattggacgtcattaatatcttgtccaaatcagagagcatctcgtccccaagtatctcagttttcaaattatccagcacaacaaggtttccttttc |
100 |
Q |
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| T |
11975450 |
gcaccattggacgtcattaatatcttgtccaaatcagagagcatctcgtccccaagtatctcagttttcaaattatccagcacaacaaggtttccttttc |
11975549 |
T |
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| Q |
101 |
cgccgtcagtgtaagtagatgacatgtcagtggtattgaggaattccacatcataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctc |
200 |
Q |
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| T |
11975550 |
cgccgtcagtgtaagtagatgacatgtcagtggtattgaggaattccacatcataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctc |
11975649 |
T |
|
| Q |
201 |
acaaataagacgggcaagttttgtcttccctattcctgcgaacccaacaatggaaaccacagaaactttcccaacggattcagctcctgtgtggagcggg |
300 |
Q |
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| T |
11975650 |
acaaataagacgggcaagttttgtcttccctattcctgcgaacccaacaatggaaaccacagaaactttcccaacggattcagctcctgtgtggagcggg |
11975749 |
T |
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| Q |
301 |
ataagttgatctataatttcnnnnnnnctcccaactatagccggttccaactccgtctcctcccccgtcttctcctatgcttct |
384 |
Q |
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| T |
11975750 |
ataagttgatctataatttctttttttctcccaactatagccggttccaactccgtctcctcccccgtcttctcccatgcttct |
11975833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 11730896 - 11730841
Alignment:
| Q |
181 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcc |
236 |
Q |
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| T |
11730896 |
gctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcc |
11730841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 11730452 - 11730395
Alignment:
| Q |
181 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctg |
238 |
Q |
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||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||| |
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| T |
11730452 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctg |
11730395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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