View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_64 (Length: 383)
Name: NF16091_low_64
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 36926640 - 36926283
Alignment:
| Q |
20 |
tttatgtcggaagtccaatctggagtgtctctctgtccaaggtagacctcatcactagcatgcctagacaatatttccacaagtgaaagaccaagaacag |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926640 |
tttatgtcagaagtccaatctggagtgtctctctgtccaaggtagacctcatcactagcatgcctagacaatatttccacaagtgaaagaccaagaacag |
36926541 |
T |
|
| Q |
120 |
cttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcgtcggct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926540 |
cttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcgtcggct |
36926441 |
T |
|
| Q |
220 |
catagaaggacgactcggtggatagcctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926440 |
catagaaggacgactcggtggatagcctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtt |
36926341 |
T |
|
| Q |
320 |
tcaatcagatctttgagagtatgcatctttggccaccaaggctcatctttcttctcac |
377 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36926340 |
tcaatcagctcttcgagagtatgcatctttggccaccaaggctcatctttcttgtcac |
36926283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 80 - 315
Target Start/End: Original strand, 49608226 - 49608461
Alignment:
| Q |
80 |
tgcctagacaatatttccacaagtgaaagaccaagaacagcttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcat |
179 |
Q |
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|||| |||||| |||| || |||||||| ||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||| ||||| || |
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| T |
49608226 |
tgcccagacaagattttcaaaagtgaaatgtcaagaacagcttgaaactgtgaagtaattgtcttcaaaaaaggcttgtcaggattttccacaagttgat |
49608325 |
T |
|
| Q |
180 |
tgtactcttgagttcctttttcaggcatgagtcgtcggctcatagaaggacgactcggtggatagcctccatatggatactgtccaaagttgactgcagc |
279 |
Q |
| |
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|||| |||||||| | ||||||||||||||||| || |||| || || || || ||||||||||||||||||||||| |||||||||||||| || | |
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| T |
49608326 |
tgtattcttgagtccttttttcaggcatgagtcaccgactcagagtagaactgcttggtggatagcctccatatggataatgtccaaagttgacaacaac |
49608425 |
T |
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| Q |
280 |
atggagagctgaagcaatccatataataatagtgca |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
49608426 |
atggagagttgaagcaatccatataataatagtgca |
49608461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 49608458 - 49608494
Alignment:
| Q |
341 |
tgcatctttggccaccaaggctcatctttcttctcac |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
49608458 |
tgcatctttggccaccaaggctcatctttcttgtcac |
49608494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 386672 - 386538
Alignment:
| Q |
79 |
atgcctagacaatatttccacaagtgaaagaccaagaacagcttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttca |
178 |
Q |
| |
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|||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| |||||||| | |||||| |||| |||||||||| |||||| |
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| T |
386672 |
atgcctagacaagattttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaaagccttgtgaggattttcctcaagttcg |
386573 |
T |
|
| Q |
179 |
ttgtactcttgagttcctttttcaggcatgagtcg |
213 |
Q |
| |
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||||| |||||||||||| |||||||||||||||| |
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| T |
386572 |
ttgtattcttgagttcctatttcaggcatgagtcg |
386538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 42692170 - 42692230
Alignment:
| Q |
256 |
atactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaa |
316 |
Q |
| |
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|||||||||||| || || || ||||| |||||||||||||||||||| | | |||||||| |
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| T |
42692170 |
atactgtccaaaattaacagctgcatgaagagctgaagcaatccatatgacagtagtgcaa |
42692230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 372
Target Start/End: Original strand, 46708976 - 46709303
Alignment:
| Q |
45 |
tgtctctctgtccaaggtagacctcatcactagcatgcctagacaatatttccacaagtgaaagaccaagaacagcttgaaactgtgaagtgattgtttt |
144 |
Q |
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||||||| ||||||||||||||||||||| || ||| ||||||| ||||| | ||| |||| |||| || || || || |||| ||||||||||| |
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| T |
46708976 |
tgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataagcgaaatgccaacaagagtctgcaattgtgccgtgattgtttt |
46709075 |
T |
|
| Q |
145 |
cagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcgtcggctcatagaaggacgactcggtggatag |
244 |
Q |
| |
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|| ||||||||| ||||||||| || |||||||| |||||| ||||||||| |||||||||| ||| || || || | ||||| | |||| || |
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| T |
46709076 |
caaaaaagctttatcaggatttgtcacaagttcatcatactctatagttcctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaa |
46709175 |
T |
|
| Q |
245 |
cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagatctttgagagtatgca |
344 |
Q |
| |
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||| || | ||||| ||||||||||| || || ||||| ||||||||||||||||||||||| || ||||| ||||| ||| |||| | || |||| |
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| T |
46709176 |
cctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttccactgtttgca |
46709275 |
T |
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| Q |
345 |
tctttggccaccaaggctcatctttctt |
372 |
Q |
| |
|
||||||||||||||||||| | |||||| |
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| T |
46709276 |
tctttggccaccaaggctcgtttttctt |
46709303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 377
Target Start/End: Original strand, 6262233 - 6262365
Alignment:
| Q |
245 |
cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagatctttgagagtatgca |
344 |
Q |
| |
|
|||||||| ||||| |||||||| || || || ||||| |||||||||||| ||||||| |||||| ||||| || ||||| |||| | |||| |||| |
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| T |
6262233 |
cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgca |
6262332 |
T |
|
| Q |
345 |
tctttggccaccaaggctcatctttcttctcac |
377 |
Q |
| |
|
| || |||||||| ||||| |||||||| |||| |
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| T |
6262333 |
ttttcggccaccatggctcgtctttcttgtcac |
6262365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 6456147 - 6456211
Alignment:
| Q |
245 |
cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataat |
309 |
Q |
| |
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|||||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||| |
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| T |
6456147 |
cctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataat |
6456211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 6362116 - 6362174
Alignment:
| Q |
245 |
cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatat |
303 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| ||||| || ||||||||||||||||| |
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|
| T |
6362116 |
cctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatat |
6362174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 6330783 - 6330864
Alignment:
| Q |
245 |
cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatca |
326 |
Q |
| |
|
|||||||||||||| || ||||| || || || ||||| | ||||||||||||||||| | |||||||||| |||||||| |
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|
| T |
6330783 |
cctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatca |
6330864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 6351231 - 6351291
Alignment:
| Q |
245 |
cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataa |
305 |
Q |
| |
|
|||||||||||||| ||||| || || || || ||||| || ||||||||||||||||||| |
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|
| T |
6351231 |
cctccatatggatattgtccgaaattaacagctgcatgaagtgctgaagcaatccatataa |
6351291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 6423148 - 6423208
Alignment:
| Q |
245 |
cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataa |
305 |
Q |
| |
|
||||||||||| || |||||||| || || || ||||| || ||||||||||||||||||| |
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|
| T |
6423148 |
cctccatatgggtattgtccaaaattaacagctgcatgaagtgctgaagcaatccatataa |
6423208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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