View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_71 (Length: 372)
Name: NF16091_low_71
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_71 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 405113 - 405483
Alignment:
| Q |
9 |
agaacctgtgaataggaaatttcttcttaattgtaaagggtggtgtagtaggcatatgcagacaagcttttggt--------catttttgaaatgtggat |
100 |
Q |
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| T |
405113 |
agaacccgtgaataggaaatttcttcttaattgtaaagggtggtgtagtaggcatatgcagacaagcttttggttttttggtcatttttgaaatgtggat |
405212 |
T |
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| Q |
101 |
gaaggatccttaaagacaaataacaaacatgttcaagaatgtagacataagtgcatgttttgaacaatcattttaattaggtctgtttggttggaatgga |
200 |
Q |
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| T |
405213 |
gaaggatccttaa-gacaaataacaaacatgttcaagaatgtagacataagtgcatgttttgaacaatcattttaattaggtctgtttggttggaatgga |
405311 |
T |
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| Q |
201 |
attgagggcaaagattattataagtttaattcattttgtttcggagaggtgaggggaaggaagaagagtcaaacttctcctaagctaatcttagctcccc |
300 |
Q |
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| T |
405312 |
attgagggcaaagattattataagtttaattcattttgttttggagagatgaggggaaggaagaagagtcaaacttctcctaagctaatcttagctcccc |
405411 |
T |
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| Q |
301 |
tccaaaatggtggatttggagagagtatgcatatttgtctctcgaatcaaatacaaaacatttcaaaatctc |
372 |
Q |
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| T |
405412 |
tccaaaatggtggatttggagagagtatgcatacttgtctctcgaatcaaatacaaaacatttcaaaatctc |
405483 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 45809591 - 45809537
Alignment:
| Q |
28 |
tttcttcttaattgtaaagggtggtgtagtaggcatatgcagacaagcttttggt |
82 |
Q |
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| T |
45809591 |
tttcttcctaattttaaagggtagtgcagtaggcataggcagataagcttttggt |
45809537 |
T |
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