View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_74 (Length: 349)

Name: NF16091_low_74
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_74
NF16091_low_74
[»] chr5 (9 HSPs)
chr5 (1-332)||(1739514-1739845)
chr5 (1-332)||(1744851-1745185)
chr5 (214-332)||(1739343-1739461)
chr5 (1-313)||(1725184-1725490)
chr5 (214-333)||(1744685-1744804)
chr5 (5-178)||(1760728-1760901)
chr5 (111-260)||(1715552-1715704)
chr5 (229-323)||(1724763-1724857)
chr5 (138-323)||(1724901-1725086)
[»] chr3 (4 HSPs)
chr3 (149-270)||(3167618-3167739)
chr3 (149-250)||(3156552-3156653)
chr3 (149-331)||(2023124-2023306)
chr3 (149-263)||(3138820-3138934)
[»] chr7 (3 HSPs)
chr7 (126-263)||(7490802-7490933)
chr7 (169-263)||(7484085-7484179)
chr7 (215-263)||(9011746-9011794)
[»] chr8 (1 HSPs)
chr8 (149-250)||(23852503-23852607)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 1739845 - 1739514
Alignment:
Q  1 tataaaaattgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttccgagttaaacttagacagatcaatattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739845 tataaaaattgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttccgagttaaacttagacagatcaatattat 1739746  T
Q  101 ccttggtagtagtaggatcctcactatttttattgtttatgattgtgcttgaacttgtagcaacatttgtagaagaatctccagattttataatagcacc 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739745 ccttggtagtagtatgatcctcactatttttattgtttatgattgtacttgaacttgtagcaacatttgtagaagaatctccagattttataatagcacc 1739646  T
Q  201 aatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctc 300  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||  ||||||  |||||||| |||| |||||| ||||||    
T  1739645 aatcttgtcattcgtaccatcttcaatcctcgaagcagttgcaccaccaaatcctagaattccagccccactattactattgctaccctccatatttctc 1739546  T
Q  301 aaaccaacaagagaaggatttaatatatcttt 332  Q
    |||| |||||| ||||| ||||||||||||||    
T  1739545 aaactaacaagcgaagggtttaatatatcttt 1739514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 1745185 - 1744851
Alignment:
Q  1 tataaaaattgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttccgagttaaacttagacagatcaatattat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||| |||||||| ||    
T  1745185 tataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttctgcgttgaacttcgacaaatcaatatcat 1745086  T
Q  101 ccttg---gtagtagtaggatcctcactatttttattgtttatgattgtgcttgaacttgtagcaacatttgtagaagaatctccagattttataatagc 197  Q
    |||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||    
T  1745085 ccttgctggtagtagtaggatccacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagc 1744986  T
Q  198 accaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgttt 297  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||   |||||  |||||||| |||| || | | |||    
T  1744985 accaatcttgttattcataccatcttcaatccttgaagcagttgcaccaccaaatcctaaaattccagtcccactattactattgctacccttcgtattt 1744886  T
Q  298 ctcaaaccaacaagagaaggatttaatatatcttt 332  Q
    ||||||| || ||| ||||| ||||||||||||||    
T  1744885 ctcaaactaaaaagtgaagggtttaatatatcttt 1744851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 1739461 - 1739343
Alignment:
Q  214 gtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739461 gtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 1739362  T
Q  314 aaggatttaatatatcttt 332  Q
    |||||||||||||||||||    
T  1739361 aaggatttaatatatcttt 1739343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1725490 - 1725184
Alignment:
Q  1 tataaaaattgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttccgagttaaacttagacagatcaatattat 100  Q
    |||||||| | ||||||||| || ||||| |||||||||||| | |||||||||||||||||||||||||| |  || ||||| |||| |||||||| ||    
T  1725490 tataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcagctttgaacttcgacatatcaatatcat 1725391  T
Q  101 ccttggtagtagtaggatcctcactatttttattgtttatgattgtgcttgaacttgtagcaacatttgtagaagaatctccagattttataatagcacc 200  Q
    ||||||| ||||||| |||| || |||||||||| |||||||||| | |||||||||||||||||| | |||||||||||||  |||| | |||||||||    
T  1725390 ccttggtggtagtagcatccacaatatttttattttttatgattgcgtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcacc 1725291  T
Q  201 aatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctc 300  Q
    ||| || | ||| ||  |||||||||||||||||||||||  ||||||||  |||||||||||  ||||      | ||| |||||||||||| ||||||    
T  1725290 aattttattatttgtgtcatcttcaatccttgaagtagttccaccaccaatacctagaattccagcccc------attataactactctccatatttctc 1725197  T
Q  301 aaaccaacaagag 313  Q
    |||| ||||||||    
T  1725196 aaactaacaagag 1725184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 1744804 - 1744685
Alignment:
Q  214 gtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 313  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||    
T  1744804 gtaccatcttcaatccttgaagtaattgcaccaccaaatcctagaattcctaccccacgattactattactactctccatgtttctcaaactaataagag 1744705  T
Q  314 aaggatttaatatatctttt 333  Q
    ||||||||||||||||||||    
T  1744704 aaggatttaatatatctttt 1744685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 1760901 - 1760728
Alignment:
Q  5 aaaattgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttccgagttaaacttagacagatcaatattatcctt 104  Q
    |||| |||||||||||| ||||||||||||||||| || | || ||  |||||||||||||||||||  |||| ||||| ||  ||| ||||| ||| |     
T  1760901 aaaactgaatttaaagcttaagtgataaatcaagcgcataagattccgaattggaggattcttcttcaaagttgaactttgattgatgaatatcatcttc 1760802  T
Q  105 ggtagtagtaggatcctcactatttttattgtttatgattgtgcttgaacttgtagcaacatttgtagaagaat 178  Q
    ||||  |||| ||  | || |||||||||||| |||||||| | ||||||||||| ||| ||||||||||||||    
T  1760801 ggtataagtaagagacacattatttttattgtgtatgattgagtttgaacttgtatcaatatttgtagaagaat 1760728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 1715552 - 1715704
Alignment:
Q  111 agtaggatcctcactatttttattgtttatgattgtgcttgaacttgtagcaacatttgtagaa---gaatctccagattttataatagcaccaatcttg 207  Q
    |||||||||| | ||||||||||| || |||||||   |||||||| ||||||| |||| ||||   ||||||||| ||||||||| | | ||||| |||    
T  1715552 agtaggatccacgctatttttatttttcatgattgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttg 1715651  T
Q  208 tcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaat 260  Q
    | ||| ||||||||||||||| ||||| || ||| ||| ||||||||||||||    
T  1715652 ttattggtaccatcttcaatctttgaaataattgcacccccaaatcctagaat 1715704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 1724857 - 1724763
Alignment:
Q  229 cttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaa 323  Q
    ||||||||||||  ||||||||  |||||||| || || ||||  ||| ||||||||| |||||| |||||||||| |||||||||||| |||||    
T  1724857 cttgaagtagttccaccaccaatacctagaatcccaactccactattattattactaccctccatatttctcaaactaacaagagaagggtttaa 1724763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 323
Target Start/End: Complemental strand, 1725086 - 1724901
Alignment:
Q  138 tatgattgtgcttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagta 237  Q
    |||||||| | ||||||||| |||||||||| |  ||||||||||  | |||| |||  ||| ||| |||| |||  | | ||||||||||||||||| |    
T  1725086 tatgattgagtttgaacttgaagcaacatttttgaaagaatctccgcactttagaatgccacaaattttgttatttttgctatcttcaatccttgaagca 1724987  T
Q  238 gttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaa 323  Q
    |||  ||||||||  |||||||  || || ||||   |||||||||||| |||||| ||| |||||| ||||| |||||| |||||    
T  1724986 gttccaccaccaatacctagaaccccaactccactagtactattactaccctccatatttttcaaactaacaaaagaagggtttaa 1724901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 3167739 - 3167618
Alignment:
Q  149 ttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccacc 248  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||| || | ||| ||||||||||| |||||||||||| ||| ||||||    
T  3167739 ttgaacttgtagcaacatttgtagaagaatctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagtacttgcaccacc 3167640  T
Q  249 aaatcctagaattcccacccca 270  Q
    ||  || |||||||| ||||||    
T  3167639 aataccaagaattccaacccca 3167618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 3156552 - 3156653
Alignment:
Q  149 ttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccacc 248  Q
    ||||||||| ||||||||||||||||||||||||  |||||| ||||||||| || || | ||| |||||||||||||||||||||||| ||| ||||||    
T  3156552 ttgaacttgcagcaacatttgtagaagaatctcctaattttagaatagcacctattttattatttgtaccatcttcaatccttgaagtacttgcaccacc 3156651  T
Q  249 aa 250  Q
    ||    
T  3156652 aa 3156653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 331
Target Start/End: Complemental strand, 2023306 - 2023124
Alignment:
Q  149 ttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccacc 248  Q
    |||||||||| | ||||||||||||||||||| || | |||| | ||| |||||| || | |||   |||||||||||||||| ||||||||| | | ||    
T  2023306 ttgaacttgttgtaacatttgtagaagaatcttcaaactttagattagtaccaattttattattttcaccatcttcaatccttaaagtagttgcatcccc 2023207  T
Q  249 aaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaatatatctt 331  Q
        ||||||||||| |||| |   ||||||||||| | |||||| |||||||||| |||||||||||| |||||||| ||||    
T  2023206 ggtacctagaattccaaccctagaattactattactgccctccatatttctcaaactaacaagagaagggtttaatatctctt 2023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 3138820 - 3138934
Alignment:
Q  149 ttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccacc 248  Q
    ||||| |||||||||| |||||||||||||||||  ||| || |||||||||||| || | ||  ||||||| ||| ||| |||||||||||| ||||||    
T  3138820 ttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatatgtaccatattcgatctttgaagtagttgcaccacc 3138919  T
Q  249 aaatcctagaattcc 263  Q
    ||  |||||| ||||    
T  3138920 aatacctagatttcc 3138934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 7490802 - 7490933
Alignment:
Q  126 atttttattgtttatgattgtgcttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttca 225  Q
    |||||| |||||| || ||| |||||||||||||||||      ||||||||||||||  ||||| |||||||||||| || | ||| ||||||||||||    
T  7490802 atttttcttgtttgtgtttgagcttgaacttgtagcaa------tagaagaatctccaagttttagaatagcaccaattttattatttgtaccatcttca 7490895  T
Q  226 atccttgaagtagttgaaccaccaaatcctagaattcc 263  Q
    || ||||||||| |||  |||||||| |||||| ||||    
T  7490896 attcttgaagtacttgctccaccaaaacctagagttcc 7490933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 7484085 - 7484179
Alignment:
Q  169 gtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcc 263  Q
    ||||||||||| |||  ||||| |||||||||||| || | ||| |||||||||| ||| ||||||||| |||  |||||||| |||||| ||||    
T  7484085 gtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcc 7484179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 9011746 - 9011794
Alignment:
Q  215 taccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcc 263  Q
    |||||||||||||| ||||| |||||| ||||||||| |||||||||||    
T  9011746 taccatcttcaatctttgaactagttgcaccaccaaaccctagaattcc 9011794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 23852607 - 23852503
Alignment:
Q  149 ttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaa---tcttgtcattcgtaccatcttcaatccttgaagtagttgaacc 245  Q
    ||||||||||||||| ||||||||||||||||||  |||||| |||||||||||   | || | ||| ||||||||||| || ||||||||||||| |||    
T  23852607 ttgaacttgtagcaatatttgtagaagaatctcccaattttaaaatagcaccaattttattattatttgtaccatcttcgattcttgaagtagttgcacc 23852508  T
Q  246 accaa 250  Q
     ||||    
T  23852507 gccaa 23852503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University