View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_76 (Length: 345)
Name: NF16091_low_76
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 43384281 - 43383963
Alignment:
| Q |
18 |
ttaggaaagaccctgaatcacaatataatactgcacttaaattaattttaattgagttgtaagatggcgatggcgcagttaggtaagtatgaagagaagt |
117 |
Q |
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| T |
43384281 |
ttaggaaagaccctgaatcacaatataatactgcacttaaattaattttaattgagttgtaagatggcgatggcgcagttaggtaagtatgaagagaagt |
43384182 |
T |
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| Q |
118 |
taataaaaacaaaaatagaatactaagagaaatgaaataagaggggtaattagaattaggatgcaaataaaatgaaacatacatgagcaacggt----ga |
213 |
Q |
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| T |
43384181 |
taataaaaacaaaaatagaatactaagagaaatgaaataagagaggtaattagaattagggtgcaaataaaatgaaacaaacatgagcaacggtgatcga |
43384082 |
T |
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| Q |
214 |
tgatgacctaataacttaactaagtagtaaaatatatattagaagagtaaagaagaagaaattaattaattaaagtcccaacctcaaatcaagagtgagg |
313 |
Q |
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| T |
43384081 |
tgatgacctaataacttaattaagtagtaaaatatatattagaagagtaaagaagaagaaattaattaattaaagtcccaacctcaaatcaagagtgagg |
43383982 |
T |
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| Q |
314 |
ggagaagaagaatgattat |
332 |
Q |
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| T |
43383981 |
ggagaagaagaatgattat |
43383963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 25870684 - 25870636
Alignment:
| Q |
281 |
aattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgat |
329 |
Q |
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| T |
25870684 |
aattaaagtcacaacctcaaatgaagagtgaggggagaagaagaatgat |
25870636 |
T |
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