View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_78 (Length: 343)
Name: NF16091_low_78
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_78 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 43942942 - 43942612
Alignment:
| Q |
11 |
gagatgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43942942 |
gagatgaagagttaaaatgagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatt |
43942843 |
T |
|
| Q |
111 |
tggtggacaaaatcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagagg |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43942842 |
tggtgcacaaaatcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagagg |
43942743 |
T |
|
| Q |
211 |
aaaagtgtagaaagatgatttggtgttattgacatcaatagtagacatggtggaaaagtcaagnnnnnnnnngagggaaatgataaaattgatcaacaaa |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
43942742 |
aaaagtgtagaaagatggtttggtgttattgacatcaatagtagacatggtggaaaagtcaag--aaaaaatgaggtaaatgataaaattgatcatcaaa |
43942645 |
T |
|
| Q |
311 |
tattacagaatgagaagaaaaggaatgagattt |
343 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
43942644 |
tattacagaatgagcagaaaaggaatgagattt |
43942612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 342
Target Start/End: Original strand, 2501056 - 2501234
Alignment:
| Q |
164 |
taaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaaaga--tgatttggtgttattgacatcaatagtagacatggt |
261 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||| || || |||||||||| | || ||||||||||| | |
|
|
| T |
2501056 |
taaaaaacatgaaataagattagaacatttggatagcatggttgaggaaaaatgtagaaagatgtggttcggtgttattgtcctctgtagtagacatgat |
2501155 |
T |
|
| Q |
262 |
ggaaaagtcaagnnnnnnnnngagggaaatgataaaattgatcaacaaatattacagaatgagaagaaaaggaatgagatt |
342 |
Q |
| |
|
|||||| | ||| |||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2501156 |
ggaaaaatgaag--agagaatgaggtaaatgataaaattgatcatgaaatgttacagaatgagcagaaaaggaatgagatt |
2501234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 22074042 - 22073958
Alignment:
| Q |
44 |
taatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatttggtggacaaaatcacat |
128 |
Q |
| |
|
|||| ||| |||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
22074042 |
taattcaaaattgaagatgaattatacaattgttgtttgaaagtggtgatgaacaaaacccaaaatttggtgcgcaaaattacat |
22073958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 5884995 - 5885325
Alignment:
| Q |
11 |
gagatgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5884995 |
gagatgaagagttaaaatgagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatt |
5885094 |
T |
|
| Q |
111 |
tggtggacaaaatcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagagg |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885095 |
tggtgcacaaaatcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagagg |
5885194 |
T |
|
| Q |
211 |
aaaagtgtagaaagatgatttggtgttattgacatcaatagtagacatggtggaaaagtcaagnnnnnnnnngagggaaatgataaaattgatcaacaaa |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
5885195 |
aaaagtgtagaaagatggtttggtgttattgacatcaatagtagacatggtggaaaagtcaag--aaaaaatgaggtaaatgataaaattgatcatcaaa |
5885292 |
T |
|
| Q |
311 |
tattacagaatgagaagaaaaggaatgagattt |
343 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
5885293 |
tattacagaatgagcagaaaaggaatgagattt |
5885325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 54946124 - 54946315
Alignment:
| Q |
123 |
tcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54946124 |
tcacatatttatacacacaatgtttctcaatgacacgatagtaaaaaacatgatataagattataacatttagatagcatggtagaggaaaagtgtagaa |
54946223 |
T |
|
| Q |
223 |
agatgatttggtgttattgacatcaatagtagacatggtggaaaagtcaagnnnnnnnnngagggaaatgataaaattgatcaacaaatattac |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
54946224 |
agatggtttggtgttattgacatcaatagtagacatggtggaaaagtcaag--aaaaaatgaggcaaatgataaaattgatcatcaaatattac |
54946315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 10741 - 10995
Alignment:
| Q |
11 |
gagatgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10741 |
gagatgaaaagttaaaatgagtggaaaaaacagtaagacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatt |
10840 |
T |
|
| Q |
111 |
tggtggacaaaatcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagagg |
210 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10841 |
tggtgcacaaaatcacatatttatatacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagagg |
10940 |
T |
|
| Q |
211 |
aaaagtgtagaaagatgatttggtgttattgacatcaatagtagacatggtggaa |
265 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10941 |
aaaagtgtagaaagatggtttggtgttattgacatcaatagtagacatggtggaa |
10995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 10999 - 11106
Alignment:
| Q |
229 |
tttggtgttattgacatcaatagtagacatggtggaaaagtcaagnnnnnnnnngagggaaatgataaaattgatcaacaaatattacagaatgagaaga |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
10999 |
tttggtgttattgacatcaatagtagacatggtggaaaagt-aagaaaaaat--gaggtaaatgataaaattgatcatcaaatattacagaatgagcaga |
11095 |
T |
|
| Q |
329 |
aaaggaatgag |
339 |
Q |
| |
|
||||||||||| |
|
|
| T |
11096 |
aaaggaatgag |
11106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 16856716 - 16856372
Alignment:
| Q |
11 |
gagatgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16856716 |
gagatgaagagttaaaatgagtggaaaaaaaagtaatacaatattgaagatgaactaaccaattgttgcttgaatgcggtgatgaacaaaacccaaaatt |
16856617 |
T |
|
| Q |
111 |
tggtgg--------------acaaaatcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttaga |
196 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16856616 |
tggtgcccaaaatttggtgcacaaaatcacatatttatacacacaatgtttctcaatgatgtgatagtaaaaaacatgatatgagattagaacatttaga |
16856517 |
T |
|
| Q |
197 |
tagcatggtagaggaaaagtgtagaaagatgatttggtgttattgacatcaatagtagacatggtggaaaagtcaagnnnnnnnnngagggaaatgataa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
16856516 |
tagcatggtagaggaaaagtgtagaaagttggtttggtgttattgacatcaatagtagacatggtggaaaagtcaag--aaaaaatgaggtaaatgataa |
16856419 |
T |
|
| Q |
297 |
aattgatcaacaaatattacagaatgagaagaaaaggaatgagattt |
343 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
16856418 |
aattgatcaacaaatactacagaatgagcagaaaaggaatgagattt |
16856372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 26615892 - 26615996
Alignment:
| Q |
11 |
gagatgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatt |
110 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
26615892 |
gagatgaagagttaaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaatt |
26615991 |
T |
|
| Q |
111 |
tggtg |
115 |
Q |
| |
|
||||| |
|
|
| T |
26615992 |
tggtg |
26615996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 26721820 - 26721924
Alignment:
| Q |
11 |
gagatgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatt |
110 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
26721820 |
gagatgaagagttaaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaatt |
26721919 |
T |
|
| Q |
111 |
tggtg |
115 |
Q |
| |
|
||||| |
|
|
| T |
26721920 |
tggtg |
26721924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 47933322 - 47933513
Alignment:
| Q |
123 |
tcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933322 |
tcacatatttatacacacaatgtttctcaatgacacgatagtaaaaaacatgatataagattataacatttagatagcatggtagaggaaaagtgtagaa |
47933421 |
T |
|
| Q |
223 |
agatgatttggtgttattgacatcaatagtagacatggtggaaaagtcaagnnnnnnnnngagggaaatgataaaattgatcaacaaatattac |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
47933422 |
agatggtttggtgttattgacatcaatagtagacatggtggaaaagtcaag--aaaaaatgaggcaaatgataaaattgatcatcaaatattac |
47933513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 342
Target Start/End: Original strand, 26230828 - 26230973
Alignment:
| Q |
195 |
gatagcatggtagaggaaaagtgtagaaagatgatttggtgttattgacatcaatagtagacatggtggaaaagtcaagnnnnnnnnngagggaaatgat |
294 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
26230828 |
gatagcatgatagacgaaaagtgtagaaacatggtttggtgttattgacatcaacagtagacatagtggaaaagtcaag--agagaatgaggtaaatgat |
26230925 |
T |
|
| Q |
295 |
aaaattgatcaacaaatattacagaatgagaagaaaaggaatgagatt |
342 |
Q |
| |
|
||| || |||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
26230926 |
aaacttcatcatcaaatattacagaatgatcataaaaggaatgagatt |
26230973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 653324 - 653423
Alignment:
| Q |
36 |
aaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatttggtggacaaaatcacatatttata |
135 |
Q |
| |
|
||||||| |||||||| || ||||||| | | |||||| ||||||||| | ||||||||||||||||||| ||||||| | ||||| ||||||||||| |
|
|
| T |
653324 |
aaaaacaataatacaaaatcgaagatgttccatccaattattgcttgaaagttgtgatgaacaaaacccaaactttggtgcaaaaaataacatatttata |
653423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 40072087 - 40072225
Alignment:
| Q |
15 |
tgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatttggt |
114 |
Q |
| |
|
|||||||| ||| ||||||||| || | |||||||| |||||||||||| || |||||| ||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
40072087 |
tgaagagtaaaagtgagtggaataag-agtaatacaaaattgaagatgaattatccaattattgcttgaaagggatgaacaacaaaacccaaaatttggt |
40072185 |
T |
|
| Q |
115 |
ggacaaaatcacatatttatacacacaatgtttctcaatg |
154 |
Q |
| |
|
| | ||| ||||| ||||||||||||| ||| |||||| |
|
|
| T |
40072186 |
gaaagaaactacatacttatacacacaatctttttcaatg |
40072225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 51167421 - 51167531
Alignment:
| Q |
34 |
gaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaacccaaaatttggtggacaaaatcacatattta |
133 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| | |||| |||||||| | ||||||||||||||| |||||||||| || ||||| |||| ||||| |
|
|
| T |
51167421 |
gaaaaaacaataatagaaaattgaagaggaacaattcaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattcacgaattta |
51167520 |
T |
|
| Q |
134 |
tacacacaatg |
144 |
Q |
| |
|
||||||||||| |
|
|
| T |
51167521 |
tacacacaatg |
51167531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 32504340 - 32504252
Alignment:
| Q |
14 |
atgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaaccc |
104 |
Q |
| |
|
||||||||| ||| ||||||||||| || |||||||| ||||||||| ||||| ||||||||| ||| || || ||||||||||||||| |
|
|
| T |
32504340 |
atgaagagtaaaagtgagtggaaaa--caataatacaaaattgaagataaactatccaattgttacttaaaaataatgatgaacaaaaccc |
32504252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 27280829 - 27280919
Alignment:
| Q |
11 |
gagatgaagagttaaaatgagtggaaaaaacactaatacaatattgaagatgaactaaccaattgttgcttgaatatggtgatgaacaaaac |
102 |
Q |
| |
|
||||||||||| ||| ||| |||||||| || |||| || ||||||||||||||| |||||| ||||||||| |||||||| ||||||| |
|
|
| T |
27280829 |
gagatgaagagaaaaagtgactggaaaaa-catcaatataaaattgaagatgaactatccaattattgcttgaaagtggtgatggacaaaac |
27280919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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