View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_79 (Length: 341)
Name: NF16091_low_79
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 11975801 - 11976126
Alignment:
| Q |
1 |
tccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcgtggacaattcttttaaaacatctttgagatcttttatgg |
100 |
Q |
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| T |
11975801 |
tccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcgtggacaattcttttaaaacatctttgagatcttttatgg |
11975900 |
T |
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| Q |
101 |
cattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacggagagaaagttcttttctgaggcttaagaataccggcatc |
200 |
Q |
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| T |
11975901 |
cattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacggagagaaagttcttttctgaggcttaagaataccggcatc |
11976000 |
T |
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| Q |
201 |
gagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctcatgacgttggacgtggttcttaaccaggtcttggattttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11976001 |
gagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctcatgacgttggacgtggttcttaaccaggtcttggattttt |
11976100 |
T |
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| Q |
301 |
tcaagagaagttataagttggttctt |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11976101 |
tcaagagaagttataagttggttctt |
11976126 |
T |
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