View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_8 (Length: 638)
Name: NF16091_low_8
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 264 - 621
Target Start/End: Original strand, 1897589 - 1897944
Alignment:
| Q |
264 |
atatgaatttgtctttgtcatctctaacacagattttatctttgaagattgttgcgtccaaattacattttacttcccctagcatcagaacaatgttgta |
363 |
Q |
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| T |
1897589 |
atatgaatttgtctttgtcatctctaacacagattttatctttgaagattgttgcgcccaaattacattttacttcccctagcatcagaacaatgttgta |
1897688 |
T |
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| Q |
364 |
gttcctcagacgtgaccctctcggcttgttgcacgatttctgcttactgcactcgttttagcctcattaattagcacataatctgcacgggcagcttgga |
463 |
Q |
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| T |
1897689 |
gttcctcagacgtgaccctctcggcttgttgcacgatttctgcttactgcactcgttttagcctcattaattagcacataatcttcacgggcagcctgga |
1897788 |
T |
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| Q |
464 |
cattcagaccgcacgcatgacttcctccacctgcaaattaccgctatcgcacacacgccgtgtatggtaaaaaacctctatagagtgtttatgtaacatt |
563 |
Q |
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| T |
1897789 |
cattcagaccgcacgcatgacttcctccacctgcaaatttctgctatcgcacacacgccgtgtatggtaaaaaacctc--tagagtgtttatgtaacatt |
1897886 |
T |
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| Q |
564 |
tctatcattaagcccaaggtttatataactaaaaaatacgggagctagagttttatat |
621 |
Q |
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| T |
1897887 |
tctatcattatgcccaaggtttatataactaaaaaatacgggagctagagatttatat |
1897944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 1897325 - 1897495
Alignment:
| Q |
12 |
tagcataggacaatgtcactctagttcacaaatgagtcatattgtttgcttgccttcggataaaagttatagtaaagtttggaaaagaacgaataacagt |
111 |
Q |
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| T |
1897325 |
tagcataggacaatgtcactctagttcacaaatgagttatattgtttgcttgccttcggataaaagttatagtaaagtttggaaaacaacgaataacagt |
1897424 |
T |
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| Q |
112 |
tttaaaaccacataaaatagcatcaaactctaacttaagac-aggatacccactatgtcatccaacaacta |
181 |
Q |
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| T |
1897425 |
tttaaaaccacataaaatagcatcaaactctaacttaagactaggatacccactatgtcatccaacaacta |
1897495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 1897496 - 1897540
Alignment:
| Q |
218 |
ccaaattcataagcaagagaagagcttgcattaaaccccatgctt |
262 |
Q |
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| T |
1897496 |
ccaaattcataagcaagagaagagcttgcattaaaccccatgctt |
1897540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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