View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_82 (Length: 331)
Name: NF16091_low_82
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_82 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 33238924 - 33239239
Alignment:
| Q |
16 |
caaacaagatccacaaggttgggttattctcaccaaaggctacaatgttaagcttttagggcatggtgagcctatgtatcaaactttggctgattttgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33238924 |
caaacaagatccacaaggttgggttattctcaccaaaggctacaatgttaagcttttagggcatggtgagcctatgtatcaaactttggctgattttgat |
33239023 |
T |
|
| Q |
116 |
atatggaaagatagagtgctacaaaaagaaggatttgacattgcattcaaagaatactatgacactaagtttaaagatacatatgttaagcaaccatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33239024 |
atatggaaagatagagtgctacaaaaagaaggatttgacattgcattcaaagaatactatgacactaaggttaaagatacatatgttaagcaaccatgtg |
33239123 |
T |
|
| Q |
216 |
aaattatcaacgttgataacaatatcaatggaaatgttatagctactatatcatgcccaaatcctacttgtggacgtgtgatggaggtgagttctgttaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33239124 |
aaattatcaacgttgataacaatatcaatggaaatgttatagctactatatcatgtccaaatcctacttgtggacgtgtgatggaggtgagttctgttaa |
33239223 |
T |
|
| Q |
316 |
ctacaagtgttgccac |
331 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33239224 |
ctacaagtgttgccac |
33239239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 33223704 - 33223787
Alignment:
| Q |
247 |
aaatgttatagctactatatcatgcccaaatcctacttgtggacgtgtgatggaggtgagttctgttaactacaagtgttgcca |
330 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| |||||| || | |||||||| ||||| |
|
|
| T |
33223704 |
aaatgttataggtactatatcatgccctaatcctatgtgtggacgtgtgatggaggttagttctattcattacaagtgctgcca |
33223787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 33232658 - 33232731
Alignment:
| Q |
257 |
gctactatatcatgcccaaatcctacttgtggacgtgtgatggaggtgagttctgttaactacaagtgttgcca |
330 |
Q |
| |
|
||||||||| | || ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
33232658 |
gctactataacttgtccaaatcctttttgtggacgtgtgatggaggtgacttctgttaattacaagtgttgcca |
33232731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University