View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_83 (Length: 330)
Name: NF16091_low_83
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 35110152 - 35109854
Alignment:
| Q |
16 |
ccataaactacaacatgtaaatgaaattgaaaattagattaatattaaaggacacagaaaatagaaacatatacttttgtataaatcaagctcgaaataa |
115 |
Q |
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| T |
35110152 |
ccataaactacaacatgtaaatgaaattgaaaattagattaatattaaaggacagaaaaaatagaaacatatacttttgtataaatcaagctcgaaataa |
35110053 |
T |
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| Q |
116 |
ttaatcaccttgggggattgtcctttagcaagtcgatcatacaatttccggtccttgctgacatatataaaagtaagcatgaatgaatccaaaaaattta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
35110052 |
ttaatcaccttgggggattgtcctttagcaagtcgatcatacaatttccggtccttgctgtcatatataaaaggaagcatgaatgaatccaaaaaattta |
35109953 |
T |
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| Q |
216 |
agtacttgataattgaatttgaactttctataggcatgatatgaattttatatttaatttgtaagtttactcgaaattgttgagcttgaagtaagtaaa |
314 |
Q |
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| T |
35109952 |
agtacttgataattgaatttgaactttctataggcatgatatgaattttatatttaatttgtaagtttactcgaaattgttgagcttgaagtaagtaaa |
35109854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 35096851 - 35096739
Alignment:
| Q |
90 |
ttttgtataaatcaagctcgaaataattaatcaccttgggggattgtcctttagcaagtcgatcatacaatttccggtccttgctgacatatataaaagt |
189 |
Q |
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|||||||||||| ||| || || ||||||||||||||||| || || |||||||||||||||||||||| || | ||| ||||||| |||||||||||| |
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| T |
35096851 |
ttttgtataaataaagatctaa-taattaatcaccttgggagactggcctttagcaagtcgatcatacagttccgggttcttgctgccatatataaaagg |
35096753 |
T |
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| Q |
190 |
aagcatgaatgaat |
203 |
Q |
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| T |
35096752 |
aagcatgcatgaat |
35096739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 35102637 - 35102551
Alignment:
| Q |
227 |
attgaatttgaactttctataggcatgatatgaattttatatttaatttgtaagtttactcgaaattgttgagcttgaagtaagtaa |
313 |
Q |
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||||||| |||||| |||||||||| |||| || || |||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
35102637 |
attgaatatgaactaactataggcatcatattaaaattttatttaattttcaagtttactcgaaattgttgagcttgaagtaggtaa |
35102551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 35096548 - 35096477
Alignment:
| Q |
243 |
ctataggcatgatatgaattttatatttaatttgtaagtttactcgaaattgttgagcttgaagtaagtaaa |
314 |
Q |
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|||||||||| |||| || || ||||||||||| ||||||||| ||||||||||||||||||||| ||||| |
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| T |
35096548 |
ctataggcatcatattaaaattttatttaatttgcaagtttacttgaaattgttgagcttgaagtacgtaaa |
35096477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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