View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_85 (Length: 328)
Name: NF16091_low_85
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_85 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 302103 - 301795
Alignment:
| Q |
8 |
agaatatggatacaatatttttcacatgtctcgatcaaatgcctgcgattaggtaaaaatattaaaaataacagttcggctcatgtttctgcctaaaaga |
107 |
Q |
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| T |
302103 |
agaatatggatacaatatttttcacatgtctcgatcaaatgcctgcgattaggtaaaaatattaaaaataacagttcggctcatgtttctgcctaaaaga |
302004 |
T |
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| Q |
108 |
atgagaaatgagataacagttaaccgtataaaaacatacataagagaatagcttcccaagaaaactatatctcaccagaatagaattaaacaaagacaac |
207 |
Q |
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| T |
302003 |
atgagaaatgagataacagttaaccgtataaaaacatacataagagaatagcttccaaagaaaactatatctcaccagaatagaattaaacaaagacaac |
301904 |
T |
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| Q |
208 |
attgcggtagaaattgacagaactaaatagccaacaccaaaattgtcctatatcaaaatccgatccctgtctaaagtagtcaattacaaacaggagaaat |
307 |
Q |
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| T |
301903 |
attgcggtagaaattgacagaactaaataaccaacaccaaaattgtcctatatcaaaatccgatccctgtctaaagtagtcaattacaaacaggagaaat |
301804 |
T |
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| Q |
308 |
cataggtct |
316 |
Q |
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| T |
301803 |
cataggtct |
301795 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 27464479 - 27464527
Alignment:
| Q |
197 |
acaaagacaacattgcggtagaaattg-acagaactaaatagccaacac |
244 |
Q |
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| T |
27464479 |
acaaagacagcattgcggtagaagttgtacagaactaaataaccaacac |
27464527 |
T |
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