View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_87 (Length: 324)
Name: NF16091_low_87
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_87 |
 | |
|
| [»] scaffold1961 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 14750348 - 14750055
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14750348 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
14750249 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14750248 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
14750149 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcggctgaatgaggaaac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14750148 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcggctgaatgaggaaac |
14750055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 14661151 - 14661354
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
14661151 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat |
14661250 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||||| | ||||||| || |
|
|
| T |
14661251 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgagactccttttctgcaagttttag |
14661350 |
T |
|
| Q |
213 |
ctga |
216 |
Q |
| |
|
|||| |
|
|
| T |
14661351 |
ctga |
14661354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 14652716 - 14652987
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| | ||||||| |
|
|
| T |
14652716 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgcttttggagtttgtatttaaggagcgtgccggggaagat |
14652815 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| ||||||| |||||||||| | |||||||||| |||||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||| || |
|
|
| T |
14652816 |
gttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttag |
14652915 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttg |
284 |
Q |
| |
|
|||| | || | ||||||||||||||||| | || | | || ||| || || |||||| |||||||||||| |
|
|
| T |
14652916 |
ctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttg |
14652987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 14758270 - 14757977
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||| || |||| |||||| | ||||| ||||||| |
|
|
| T |
14758270 |
gaacctgtggacagagaatgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagat |
14758171 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||||| ||||| ||||| |||| | ||||||||||||||||||||||| | | |||||| ||| ||||||| |||||| | ||| |||||||||||| |
|
|
| T |
14758170 |
gttaatatagaactgattaaaaatattacaaagatgctaatggatttaggttcttctgtttaagagcaagaattcgagacttcgtttctacaagtttcag |
14758071 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcggctgaatgaggaaac |
306 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| | || | | |||||||||||||||| |||||||||||| | | | |||||||||||||| |
|
|
| T |
14758070 |
ctgagttctacagggctgaatctcagaaatttatcgagtgctgtgattgcggtgattatctcaagaaagttgagaggtgcctgaatgaggaaac |
14757977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 14627299 - 14627528
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| || |||| ||| | ||||||| |
|
|
| T |
14627299 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggaatcgattgtcgaatacgcttttggagtttgtatttaaagagcgtgccggggaagat |
14627398 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||||||||||| ||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||| || |
|
|
| T |
14627399 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttag |
14627498 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaat |
242 |
Q |
| |
|
|||| | || | |||||||||||| |||| |
|
|
| T |
14627499 |
ctgaatcttacaaggctgaatcccataaat |
14627528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 14765430 - 14765194
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||| ||||||||| || ||| || |||| ||| | |||| | |
|
|
| T |
14765430 |
gaacctgtggagagaaaatgttcttcattcaaaccagataaggactcgactgttgaatatgcttttggaattagtacacagtgagcgtgccggcgaagtt |
14765331 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
|||||||||| || |||||||| | || ||||||||||||| ||| |||||| | |||||||||||||||||||||| ||||||| | | || |||| |
|
|
| T |
14765330 |
gttaatagaggactgattagaagtataacaaagatgctaattgatacaggtccttccgtttatgaggaagaatttgagaatccttttctgctagcttcaa |
14765231 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttga |
249 |
Q |
| |
|
||||||||||| |||||||||| |||| |||| |||| |
|
|
| T |
14765230 |
ctgagttctatcgggctgaatcacagatatttattga |
14765194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 13 - 306
Target Start/End: Original strand, 17570265 - 17570558
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||| || |||| |||||| | ||||| ||||||| |
|
|
| T |
17570265 |
gaacctgtggacagagaatgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagat |
17570364 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||||| ||||| ||||| |||| | ||||||||||||||||||||||| | | |||||||||| ||||||| |||||| | ||| |||||||||||| |
|
|
| T |
17570365 |
gttaatatagaactgattaaaaatattacaaagatgctaatggatttaggttcttctgtttatgagcaagaattcgagacttcgtttctacaagtttcag |
17570464 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcggctgaatgaggaaac |
306 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| | || | | |||||||||||||||| |||||||||||| | | | |||||||||||||| |
|
|
| T |
17570465 |
ctgagttctacagggctgaatctcagaaatttatcgagtgctgtgattgcggtgattatctcaagaaagttgagaggtgcctgaatgaggaaac |
17570558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 17684110 - 17683817
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| | ||||||| |
|
|
| T |
17684110 |
gaacctgtggagagaaattgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtatttaaggagtgtgccggggaagat |
17684011 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||||| | ||||||| || |
|
|
| T |
17684010 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgagactccttttctgcaagttttag |
17683911 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcggctgaatgaggaaac |
306 |
Q |
| |
|
|||| | || | |||||||||| |||||| | | || | || ||| ||||| |||||| |||||||||||| | | | |||||||||||||| |
|
|
| T |
17683910 |
ctgaatcttacaaggctgaatccgagaaatatatcgagtgttgtgactgcggggattatctcaagaaagttgagaggtgcctgaatgaggaaac |
17683817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 17691036 - 17690765
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
17691036 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggaatcgattgtcgaatatgcttttggagtttgtattcaaggagcgtgccggggaagat |
17690937 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||||||||||| ||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||| || |
|
|
| T |
17690936 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttag |
17690837 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttg |
284 |
Q |
| |
|
|||| | || | ||||||||||||||||| | || | | || ||| || || |||||| |||||||||||| |
|
|
| T |
17690836 |
ctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttg |
17690765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 17702194 - 17701965
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||| | ||||||| |
|
|
| T |
17702194 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtacttaaagagcgtgccggggaagat |
17702095 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||||||||||| ||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||| || |
|
|
| T |
17702094 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttag |
17701995 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaat |
242 |
Q |
| |
|
|||| | || | |||||||||||| |||| |
|
|
| T |
17701994 |
ctgaatcttacaaggctgaatcccataaat |
17701965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 17563169 - 17563405
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||| ||||||||| || ||| || |||| ||| | |||| | |
|
|
| T |
17563169 |
gaacctgtggagagaaaatgttcttcattcaaaccagataaggactcgactgttgaatatgcttttggaattagtacgcagtgagcgtgccggcgaagtt |
17563268 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
|||||||||| || |||||||| | || ||||||||||||| ||| |||||| | ||||||| |||||||||||||| ||||||| | | || |||| |
|
|
| T |
17563269 |
gttaatagaggactgattagaagtataacaaagatgctaattgatacaggtccttccgtttatggggaagaatttgagaatccttttctgctagcttcaa |
17563368 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttga |
249 |
Q |
| |
|
||||||||||| |||||||||| |||| |||| |||| |
|
|
| T |
17563369 |
ctgagttctatcgggctgaatcacagatatttattga |
17563405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 17622122 - 17622028
Alignment:
| Q |
210 |
cagctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcggctgaatgaggaa |
304 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||||||| ||| | || |||||| || |||||| ||||||||| || | |||||||||||||||| |
|
|
| T |
17622122 |
cagctgagttctacagggcagaaactcagaaatttattggatgttgtgattgtggggattatctcaagaaagctgagaggcggctgaatgaggaa |
17622028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 15196524 - 15196297
Alignment:
| Q |
16 |
cctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagatgtt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||| |||||| |||| |||| |
|
|
| T |
15196524 |
cctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatatgcttttggtattagtatgcaaggactatgctggagaagttgtt |
15196425 |
T |
|
| Q |
116 |
aatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcagctg |
215 |
Q |
| |
|
||||| ||| ||||||| || || |||| |||||||||||||||||||| | |||||| | |||||||||||| |||||| | ||||||||||||| |
|
|
| T |
15196424 |
gatagaaaactgattagatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctg |
15196325 |
T |
|
| Q |
216 |
agttctatagggctgaatcccagaaatt |
243 |
Q |
| |
|
||||||| |||||||||| |||||||| |
|
|
| T |
15196324 |
agttctaccgggctgaatcacagaaatt |
15196297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 15216942 - 15216715
Alignment:
| Q |
16 |
cctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagatgtt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||| |||||| |||| |||| |
|
|
| T |
15216942 |
cctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatatgcttttggtattagtatgcaaggactatgctggagaagttgtt |
15216843 |
T |
|
| Q |
116 |
aatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcagctg |
215 |
Q |
| |
|
||||| ||| ||||||| || || |||| |||||||||||||||||||| | |||||| | |||||||||||| |||||| | ||||||||||||| |
|
|
| T |
15216842 |
gatagaaaactgattagatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctg |
15216743 |
T |
|
| Q |
216 |
agttctatagggctgaatcccagaaatt |
243 |
Q |
| |
|
||||||| |||||||||| |||||||| |
|
|
| T |
15216742 |
agttctaccgggctgaatcacagaaatt |
15216715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 15195876 - 15195610
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||| |||| | |||||| |||| | |
|
|
| T |
15195876 |
gaacctgtggagcgaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaagtactatgctggagaagtt |
15195777 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| | | || |||||||||| || |||| ||||||||||||||||| || | ||||||| | |||||||||||| ||||||| | || || ||| |
|
|
| T |
15195776 |
gttaacataaaagtgattagaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatccttttctgcagcttccag |
15195677 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaa |
279 |
Q |
| |
|
| |||||||| |||||||||| ||||||||| |||| | | |||||| || |||||| ||||||| |
|
|
| T |
15195676 |
ccgagttctaccgggctgaatcacagaaatttattgagtgctgtgattgtggggattatctcaagaa |
15195610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 15216294 - 15216028
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||| |||| | |||||| |||| | |
|
|
| T |
15216294 |
gaacctgtggagcgaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaagtactatgctggagaagtt |
15216195 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||| | | || |||||||||| || |||| ||||||||||||||||| || | ||||||| | |||||||||||| ||||||| | || || ||| |
|
|
| T |
15216194 |
gttaacataaaagtgattagaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatccttttctgcagcttccag |
15216095 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaa |
279 |
Q |
| |
|
| |||||||| |||||||||| ||||||||| |||| | | |||||| || |||||| ||||||| |
|
|
| T |
15216094 |
ccgagttctaccgggctgaatcacagaaatttattgagtgctgtgattgtggggattatctcaagaa |
15216028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 225 - 4
Alignment:
| Q |
13 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| | | ||||| |||||||| || ||| |||||| |||||| ||||| |
|
|
| T |
225 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgatttttgaatatgcttttgggattaatatgcaaggactatgctgaggaagtc |
126 |
T |
|
| Q |
113 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcag |
212 |
Q |
| |
|
||||||| | ||| ||||||||| || | || |||||||||||||||||||| | |||||| | |||||||||||| |||||| | |||||||||| |
|
|
| T |
125 |
gttaataaaaaactgattagaaaaataacgaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcag |
26 |
T |
|
| Q |
213 |
ctgagttctatagggctgaatc |
234 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
25 |
ctgagttctaccgggctgaatc |
4 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 305
Target Start/End: Complemental strand, 24395732 - 24395558
Alignment:
| Q |
131 |
agaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcagctgagttctatagggctg |
230 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||| |||||||| |||| |||||| ||| |||| | ||||||||||||||||| ||| || | |
|
|
| T |
24395732 |
agaaatataacaaaaatgctaatggatttaggtccagctgtttatggtcaagattttgaggctcattttcttcaagtttcagctgagttttatcaggtag |
24395633 |
T |
|
| Q |
231 |
aatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcggctgaatgaggaaa |
305 |
Q |
| |
|
||||||| | ||| |||| | || |||||| ||||||||| | ||||||| || || ||| ||||||||||||| |
|
|
| T |
24395632 |
aatcccaaagattcattgagtgttgtgattgtggtgattatcttaagaaagctgaaaggcgtctgaatgaggaaa |
24395558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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