View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_88 (Length: 320)

Name: NF16091_low_88
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_88
NF16091_low_88
[»] chr4 (3 HSPs)
chr4 (161-303)||(37616719-37616860)
chr4 (1-102)||(37616919-37617020)
chr4 (241-298)||(25899421-25899478)
[»] chr3 (4 HSPs)
chr3 (161-303)||(19768427-19768568)
chr3 (164-297)||(29199942-29200074)
chr3 (1-102)||(19768267-19768368)
chr3 (2-98)||(29199783-29199879)
[»] chr6 (1 HSPs)
chr6 (1-102)||(22082960-22083061)
[»] chr1 (2 HSPs)
chr1 (30-102)||(51389585-51389657)
chr1 (161-224)||(51389463-51389526)
[»] chr7 (2 HSPs)
chr7 (9-102)||(32663015-32663108)
chr7 (245-298)||(32663200-32663253)
[»] chr8 (2 HSPs)
chr8 (166-224)||(770534-770592)
chr8 (1-75)||(770389-770463)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 161 - 303
Target Start/End: Complemental strand, 37616860 - 37616719
Alignment:
Q  161 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggnnnnnnnngcatactattttccctagat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  37616860 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg-tttttttgcatactattttccctagat 37616762  T
Q  261 tgtgtgattatggaaggttaaacctgaaatgagaatggaaatt 303  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  37616761 tgtgtgattatggaaggttaaacttgaaatgagaatggcaatt 37616719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 37617020 - 37616919
Alignment:
Q  1 cgataggctttgttcattcaattctactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaataggga 100  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37617020 cgataggcttttttcattcaattttactctttgcctaatttgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaataggga 37616921  T
Q  101 cc 102  Q
    ||    
T  37616920 cc 37616919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 25899478 - 25899421
Alignment:
Q  241 gcatactattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg 298  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  25899478 gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatgg 25899421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 19768427 - 19768568
Alignment:
Q  161 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggnnnnnnnngcatactattttccctagat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  19768427 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg-tttttttgcatactattttccctagat 19768525  T
Q  261 tgtgtgattatggaaggttaaacctgaaatgagaatggaaatt 303  Q
    ||| ||||||||||||||||||| |||||||||||||| ||||    
T  19768526 tgtttgattatggaaggttaaacttgaaatgagaatggcaatt 19768568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 29199942 - 29200074
Alignment:
Q  164 tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggnnnnnnnngcatactattttccctagattgt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||    
T  29199942 tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg-tttttttgcatactaatttccctagattgt 29200040  T
Q  264 gtgattatggaaggttaaacctgaaatgagaatg 297  Q
    ||||||||| ||||||||||||||||||||||||    
T  29200041 gtgattatgaaaggttaaacctgaaatgagaatg 29200074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 19768267 - 19768368
Alignment:
Q  1 cgataggctttgttcattcaattctactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaataggga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19768267 cgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaataggga 19768366  T
Q  101 cc 102  Q
    ||    
T  19768367 cc 19768368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 29199783 - 29199879
Alignment:
Q  2 gataggctttgttcattcaattctactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagg 98  Q
    |||| |||||||||||| |||| |||||||||| |||||  |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  29199783 gatatgctttgttcatttaattttactctttgcgtaatcgttgttgcatgcttgaatccatgactctcttctttaggacttctcatgtataaatagg 29199879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 22082960 - 22083061
Alignment:
Q  1 cgataggctttgttcattcaattctactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaataggga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22082960 cgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaataggga 22083059  T
Q  101 cc 102  Q
    ||    
T  22083060 cc 22083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 51389657 - 51389585
Alignment:
Q  30 tttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 102  Q
    |||||||| ||  |||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  51389657 tttgcctattcattgttgcatgcttgaatccatgaccctcttctttaggacttctcatgtataaatagggacc 51389585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 51389526 - 51389463
Alignment:
Q  161 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 224  Q
    |||| ||||| ||||||||||||||  ||||||||||||||||||||| ||||||||| |||||    
T  51389526 ctctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct 51389463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 32663015 - 32663108
Alignment:
Q  9 tttgttcattcaattctactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 102  Q
    |||||||||||| || |||||||| || ||||  |||||||||| ||||| |||  | ||||| ||| ||||||||||||||||||||||||||    
T  32663015 tttgttcattcagttttactcttttcccaatcattgttgcatgcgtgaattcattaccctcttgtttaggacttctcatgtataaatagggacc 32663108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 32663200 - 32663253
Alignment:
Q  245 actattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg 298  Q
    |||||||||||| ||||||||||| | |||||||||| |||||| |||||||||    
T  32663200 actattttccctggattgtgtgataaaggaaggttaagcctgaattgagaatgg 32663253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 770534 - 770592
Alignment:
Q  166 tctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 224  Q
    ||||| ||||||||||||| | ||||||||||||||||||||| ||||||||| |||||    
T  770534 tctaaaacttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccct 770592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 770389 - 770463
Alignment:
Q  1 cgataggctttgttcattcaattctactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttcttt 75  Q
    |||||| ||||||  |||||||| |||| |||||||||||  |||||||||  |||||||||| | |||||||||    
T  770389 cgatagactttgtctattcaattttactatttgcctaatcgttgttgcatgtttgaatccatgaccctcttcttt 770463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University