View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_91 (Length: 316)
Name: NF16091_low_91
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 300
Target Start/End: Original strand, 14282173 - 14282469
Alignment:
| Q |
4 |
tacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatc |
103 |
Q |
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| T |
14282173 |
tacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatc |
14282272 |
T |
|
| Q |
104 |
ttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcatta |
203 |
Q |
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| T |
14282273 |
ttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcatta |
14282372 |
T |
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| Q |
204 |
tctgaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacaccaac |
300 |
Q |
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| T |
14282373 |
tctgaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacgccaac |
14282469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 31 - 300
Target Start/End: Original strand, 14303958 - 14304227
Alignment:
| Q |
31 |
tcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgct |
130 |
Q |
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| T |
14303958 |
tcccatgttcacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccacgct |
14304057 |
T |
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| Q |
131 |
tgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattactactct |
230 |
Q |
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| T |
14304058 |
tgaaatttaatcacacgcatgttgttaagcaactcattcgttgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattactattct |
14304157 |
T |
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| Q |
231 |
ttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacaccaac |
300 |
Q |
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| T |
14304158 |
tcgatcgatatgcagtgaagcagaagacaatggcagtaccaagaattgctgcaacgacagatacaccaac |
14304227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 14320335 - 14320558
Alignment:
| Q |
17 |
gcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagt |
116 |
Q |
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| T |
14320335 |
gcagtacccaaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctcagcttcgcgaaactgttgaattttgttaccaaagt |
14320434 |
T |
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| Q |
117 |
actcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaa |
216 |
Q |
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| T |
14320435 |
actcttcccacgcttgaaacttaatcacacgcatgttgttaagtaactcgtttgtcgccttcatcctcgaatcgcggctcgtcattatcttaaactggaa |
14320534 |
T |
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| Q |
217 |
actattactactctttgttcgata |
240 |
Q |
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||||||||||||||| |||||||| |
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| T |
14320535 |
actattactactcttcgttcgata |
14320558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 25885037 - 25885243
Alignment:
| Q |
37 |
gttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaac |
136 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
25885037 |
gttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattcacgaaactgtttaatcttgttaccgaaatactcttcccaagcttgaaac |
25885136 |
T |
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| Q |
137 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattactactctttgttc |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||| |||||||||||||| | ||||||||||| |||| |
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| T |
25885137 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaagttgttactactcttggttc |
25885236 |
T |
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| Q |
237 |
gatatag |
243 |
Q |
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||||||| |
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| T |
25885237 |
gatatag |
25885243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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