View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_95 (Length: 309)
Name: NF16091_low_95
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_95 |
 | |
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| [»] scaffold0019 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 749973 - 749668
Alignment:
| Q |
1 |
atgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
749973 |
atgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacacac |
749874 |
T |
|
| Q |
101 |
gtaacacattgtacaattcataacattgg-------------atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcatt |
187 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
749873 |
gtaacacattgtacaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcctt |
749774 |
T |
|
| Q |
188 |
atattgtctcaatattttaa-ttttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttg |
286 |
Q |
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|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
749773 |
atattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtcgtgtttg |
749674 |
T |
|
| Q |
287 |
ttcatt |
292 |
Q |
| |
|
|||||| |
|
|
| T |
749673 |
ttcatt |
749668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 675374 - 675072
Alignment:
| Q |
1 |
atgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
675374 |
atgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattctt---acacacac |
675278 |
T |
|
| Q |
101 |
gtaacacattgtacaattcataacattgg-------------atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcatt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
675277 |
gtaacacattgtacaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcctt |
675178 |
T |
|
| Q |
188 |
atattgtctcaatattttaa-ttttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttg |
286 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
675177 |
atattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtcgtgtttg |
675078 |
T |
|
| Q |
287 |
ttcatt |
292 |
Q |
| |
|
|||||| |
|
|
| T |
675077 |
ttcatt |
675072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 2634006 - 2634293
Alignment:
| Q |
5 |
ttaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacacacgtaa |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||| ||| ||| | ||||||||||||||||||||| ||| ||||| | |
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|
| T |
2634006 |
ttaatgtgaaaatgaaagttttgtatattt-ggtattttatttgcagggggttt------gcttaaatgatattattgaattctt---acatgcacgtca |
2634095 |
T |
|
| Q |
105 |
cacattgtacaattcataacattgg-------------atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcattatat |
191 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| | ||||||||||| |||| || |||||| ||||||||| ||||| |
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| T |
2634096 |
cacattgtacaattcataacattggtgaaatgacctgaatataattgatataatttctgagattgtattgaagttcatttccatatgtgttgccttataa |
2634195 |
T |
|
| Q |
192 |
tgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttc |
289 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
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|
| T |
2634196 |
tgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagttcaaatgtctctttttcaggctggttgtgtttgttc |
2634293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 130 - 289
Target Start/End: Original strand, 2495705 - 2495869
Alignment:
| Q |
130 |
atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt-----tgcattatattgtctcaatattttaattttgcgtgcacctcaa |
224 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| || |||||| |||||| ||| ||||| |||||||||||||| ||||| ||||||| || |
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| T |
2495705 |
atatgattgatatagtgtctgagattgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttattttaattgcacctgaa |
2495804 |
T |
|
| Q |
225 |
gcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttc |
289 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2495805 |
gcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtgtttgttc |
2495869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 7332004 - 7331843
Alignment:
| Q |
130 |
atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt--tgcattatattgtctcaatattttaattttgcgtgcacctcaagct |
227 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||||| |||||| || |||| |||||||||||| ||||||| ||||||| |||| |
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|
| T |
7332004 |
atatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtgttgtcttatgatgtctcaatattataattttaattgcaccttaagcc |
7331905 |
T |
|
| Q |
228 |
tcaaaatagact-tataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgtt |
288 |
Q |
| |
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|| ||||| | |||||||| ||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
7331904 |
tcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtt |
7331843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 9564474 - 9564421
Alignment:
| Q |
239 |
ttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatt |
292 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9564474 |
ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatt |
9564421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 2447037 - 2447109
Alignment:
| Q |
215 |
tgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgtt |
288 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||| |
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|
| T |
2447037 |
tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtt |
2447109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 2504152 - 2504262
Alignment:
| Q |
177 |
tgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagac-ttataacttcatagttgaaatgtctctttttcaggtt |
275 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||| |||| |||||||| || ||||||| | ||||||||||||||| ||||||||| |
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|
| T |
2504152 |
tgtgttgccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttataacatattagttgaaatgtctc--tttcaggtt |
2504249 |
T |
|
| Q |
276 |
ggtcgtgtttgtt |
288 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
2504250 |
ggctgtgtttgtt |
2504262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2495533 - 2495597
Alignment:
| Q |
1 |
atgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt |
66 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| | |||||||||| || ||||||||||||| |
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|
| T |
2495533 |
atgattaatgtgaaaacgaaagttttgtatattttagacttttatttgc-agtgttttaaagttgt |
2495597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 7332059 - 7332018
Alignment:
| Q |
88 |
ttcttacacacacgtaacacattgtacaattcataacattgg |
129 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
7332059 |
ttcttacacacacgcaacacattgtacgattcataactttgg |
7332018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 2296 - 2533
Alignment:
| Q |
62 |
gttgtgaaaatgatattattgaattcttcttacacacacgtaacacattgtacaattcataacattgg-------------atatgattgatatagtgcc |
148 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||| |||| |||||| || || | |
|
|
| T |
2296 |
gttgtgtaaatgatattattgaattctt---acacacatgcaacacagtgtacaattcataacattggtaaaatgacctgaatataattgatttattgtc |
2392 |
T |
|
| Q |
149 |
tgagattgtagtgaattttgtttccacatgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttc |
248 |
Q |
| |
|
| ||||| ||||||| || |||||| || |||||| ||| | ||||||||||||||||| || |||||||||| | |||||||||||||||||| || |
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|
| T |
2393 |
ttagattatagtgaagttcatttccatatatgttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtc |
2492 |
T |
|
| Q |
249 |
atagttgaaatgtctctttttcaggttggtcgtgtttgttc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2493 |
atagttgaaatgtctctttttcaggttggttgtgtttgttc |
2533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2205 - 2270
Alignment:
| Q |
1 |
atgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt |
66 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
2205 |
atgattaatgtcaaaatgaaagttttgtatattttggtcttttatttgcaagggttttaaagttgt |
2270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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