View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_96 (Length: 308)

Name: NF16091_low_96
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_96
NF16091_low_96
[»] chr5 (2 HSPs)
chr5 (1-295)||(14503655-14503949)
chr5 (251-295)||(15385212-15385256)
[»] chr3 (2 HSPs)
chr3 (69-180)||(27484702-27484813)
chr3 (75-152)||(1150799-1150876)
[»] chr7 (1 HSPs)
chr7 (98-177)||(721876-721955)
[»] chr4 (3 HSPs)
chr4 (78-177)||(28287339-28287438)
chr4 (75-177)||(18490150-18490252)
chr4 (141-177)||(15634370-15634406)
[»] scaffold0251 (1 HSPs)
scaffold0251 (131-177)||(8500-8546)
[»] chr8 (1 HSPs)
chr8 (205-247)||(2262493-2262535)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 14503655 - 14503949
Alignment:
Q  1 ttatggtggaaggatgaatgagcaagacactccaagtggttagcctcatgcctcaaggtggactacttgtgatctaggcaaactagctgcacttattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||    
T  14503655 ttatggtggaaggatgaatgagcaagacactccaagtggttagcctcatgcctcaaggtggactacttgtgatgtaggcaaagtggctgcacttattgaa 14503754  T
Q  101 gataaagaggcacacaagaaaggttcaataagaatagtgcagatttgacatctggtgtaagattgactcaaattataaaagttttgaacttcatgagcat 200  Q
    ||||||| ||| | ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||   |||| ||||||||||    
T  14503755 gataaagtggcgcgcaagaaaggttcaataaaaatagtgcagatttaacatctggtgtcagattgactcaaattataaaagtcccgaacctcatgagcat 14503854  T
Q  201 aagtcatcgcttcaccatgatgtaggggtgaatttagtctttcgaagcccaaaactgcattttactatttcacctcatttattatttttctgttt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||    
T  14503855 aagtcatcgcttcaccatgatgtaggggtgaatttagtctttcgaagcccaaaaccgcattttactatttcaacacatttattatttttctgttt 14503949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 15385256 - 15385212
Alignment:
Q  251 aaaactgcattttactatttcacctcatttattatttttctgttt 295  Q
    |||||||||||||||||||||| |  |||||||||||||||||||    
T  15385256 aaaactgcattttactatttcagcatatttattatttttctgttt 15385212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 27484813 - 27484702
Alignment:
Q  69 gtgatctaggcaaactagctgcacttattgaagataaagaggcacacaagaaaggttcaataagaatagtgcagatttgacatctggtgtaagattgact 168  Q
    ||||| |||||||||| |  |||| ||| |||||||||| ||| ||||||||||||| | |   ||||||| |||||||||||||||||| |||| ||||    
T  27484813 gtgatttaggcaaactggtggcacatatcgaagataaagtggcgcacaagaaaggttaacttgaaatagtgtagatttgacatctggtgtcagatcgact 27484714  T
Q  169 caaattataaaa 180  Q
    | ||||| ||||    
T  27484713 cgaattaaaaaa 27484702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 1150799 - 1150876
Alignment:
Q  75 taggcaaactagctgcacttattgaagataaagaggcacacaagaaaggttcaataagaatagtgcagatttgacatc 152  Q
    ||||||||||||||||   |||||||||| ||| ||| | |||||||| ||| ||  |||||||||||||||||||||    
T  1150799 taggcaaactagctgcgtgtattgaagatgaagtggcgcgcaagaaagattcgatgggaatagtgcagatttgacatc 1150876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 721955 - 721876
Alignment:
Q  98 gaagataaagaggcacacaagaaaggttcaataagaatagtgcagatttgacatctggtgtaagattgactcaaattata 177  Q
    |||||| ||| ||||||||||||||  |||||  |||||||| ||||||| |||| |||||  |||||||||||||||||    
T  721955 gaagatgaagtggcacacaagaaagactcaatgtgaatagtgtagatttgccatccggtgtcggattgactcaaattata 721876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 28287339 - 28287438
Alignment:
Q  78 gcaaactagctgcacttattgaagataaagaggcacacaagaaaggttcaataagaatagtgcagatttgacatctggtgtaagattgactcaaattata 177  Q
    ||||||| ||||||| |||||||||| |||  || | ||||||| ||||||| | ||| |||||||||||| |||||||||  |||||| || |||||||    
T  28287339 gcaaactggctgcacgtattgaagatgaagttgcgcgcaagaaatgttcaatgaaaatggtgcagatttgatatctggtgtctgattgattcgaattata 28287438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 18490150 - 18490252
Alignment:
Q  75 taggcaaactagctgcacttattgaagataaagaggcacacaagaaaggttcaataagaatagtgcagatttgacatctggtgtaagattgactcaaatt 174  Q
    ||||||| |||||||||| |||||||||| ||  | | | ||||||| |||||||  ||||||| ||||||||| |||| ||||   |||||||||||||    
T  18490150 taggcaagctagctgcacgtattgaagatgaaatgacgcgcaagaaatgttcaatgggaatagtacagatttgatatctagtgtctaattgactcaaatt 18490249  T
Q  175 ata 177  Q
    |||    
T  18490250 ata 18490252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 15634370 - 15634406
Alignment:
Q  141 agatttgacatctggtgtaagattgactcaaattata 177  Q
    ||||||||||||||||||  |||||||||||||||||    
T  15634370 agatttgacatctggtgtcggattgactcaaattata 15634406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 8546 - 8500
Alignment:
Q  131 agaatagtgcagatttgacatctggtgtaagattgactcaaattata 177  Q
    |||||||||||||||||||||  ||||| |||||||||| |||||||    
T  8546 agaatagtgcagatttgacattcggtgttagattgactcgaattata 8500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 2262493 - 2262535
Alignment:
Q  205 catcgcttcaccatgatgtaggggtgaatttagtctttcgaag 247  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  2262493 catcgcttcaccatgatgtacgggtgaatttagccattcgaag 2262535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University