View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_97 (Length: 308)

Name: NF16091_low_97
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_97
NF16091_low_97
[»] chr2 (16 HSPs)
chr2 (1-296)||(45270488-45270783)
chr2 (44-211)||(38464158-38464326)
chr2 (49-232)||(26767757-26767941)
chr2 (66-181)||(34142186-34142302)
chr2 (65-197)||(36471869-36472002)
chr2 (65-197)||(10981534-10981667)
chr2 (49-181)||(18511256-18511389)
chr2 (66-185)||(25730482-25730602)
chr2 (68-181)||(9470100-9470214)
chr2 (95-232)||(35316397-35316534)
chr2 (127-183)||(30718372-30718428)
chr2 (107-219)||(32856144-32856256)
chr2 (50-232)||(6980116-6980299)
chr2 (49-211)||(12989191-12989354)
chr2 (129-191)||(7919307-7919369)
chr2 (49-120)||(45554567-45554639)
[»] chr6 (9 HSPs)
chr6 (65-211)||(5106314-5106461)
chr6 (50-228)||(34905337-34905516)
chr6 (68-197)||(445837-445967)
chr6 (65-195)||(10133191-10133322)
chr6 (65-197)||(31116155-31116288)
chr6 (93-232)||(1392673-1392811)
chr6 (47-185)||(13001690-13001829)
chr6 (112-181)||(12780806-12780875)
chr6 (90-195)||(17144704-17144809)
[»] chr4 (20 HSPs)
chr4 (65-232)||(50164411-50164579)
chr4 (50-232)||(8108957-8109140)
chr4 (66-211)||(754597-754743)
chr4 (49-208)||(34129420-34129580)
chr4 (95-232)||(24938411-24938548)
chr4 (67-178)||(33995985-33996097)
chr4 (65-180)||(46287457-46287573)
chr4 (69-211)||(722177-722320)
chr4 (50-181)||(24834579-24834711)
chr4 (65-232)||(43771142-43771310)
chr4 (68-211)||(47009208-47009352)
chr4 (91-185)||(5044583-5044677)
chr4 (67-183)||(26329383-26329501)
chr4 (95-181)||(49077296-49077382)
chr4 (127-199)||(45081771-45081843)
chr4 (89-219)||(22542422-22542552)
chr4 (143-197)||(37451044-37451098)
chr4 (127-232)||(26361304-26361409)
chr4 (49-197)||(39471157-39471306)
chr4 (129-197)||(45310979-45311047)
[»] chr7 (17 HSPs)
chr7 (66-211)||(44350819-44350965)
chr7 (49-181)||(31502511-31502644)
chr7 (68-232)||(6442184-6442349)
chr7 (50-181)||(39254084-39254216)
chr7 (47-232)||(46517291-46517475)
chr7 (68-232)||(22189958-22190123)
chr7 (68-181)||(11824090-11824204)
chr7 (49-181)||(27888282-27888415)
chr7 (49-185)||(33008104-33008241)
chr7 (95-195)||(10933998-10934098)
chr7 (49-181)||(36845569-36845701)
chr7 (95-211)||(11692226-11692342)
chr7 (50-117)||(27320226-27320294)
chr7 (49-211)||(14795131-14795294)
chr7 (49-211)||(15242123-15242286)
chr7 (107-174)||(32605390-32605457)
chr7 (65-229)||(27949289-27949454)
[»] chr3 (19 HSPs)
chr3 (49-230)||(52123954-52124136)
chr3 (95-195)||(138810-138910)
chr3 (49-211)||(28529253-28529414)
chr3 (65-195)||(10948593-10948724)
chr3 (90-220)||(50156668-50156798)
chr3 (96-197)||(18427181-18427282)
chr3 (49-232)||(37776699-37776883)
chr3 (49-211)||(20493462-20493625)
chr3 (49-181)||(29755500-29755633)
chr3 (65-229)||(41451894-41452059)
chr3 (96-196)||(19345032-19345132)
chr3 (60-179)||(26310495-26310615)
chr3 (65-131)||(15790466-15790533)
chr3 (47-136)||(30624631-30624719)
chr3 (65-229)||(24734721-24734886)
chr3 (96-175)||(22604608-22604687)
chr3 (128-197)||(46450146-46450215)
chr3 (49-156)||(5452132-5452240)
chr3 (129-197)||(55452046-55452114)
[»] chr1 (19 HSPs)
chr1 (91-197)||(8741254-8741360)
chr1 (49-210)||(33193050-33193212)
chr1 (49-199)||(44271918-44272069)
chr1 (49-199)||(931374-931525)
chr1 (96-199)||(41958131-41958234)
chr1 (67-117)||(4394386-4394436)
chr1 (70-179)||(49730885-49730995)
chr1 (108-197)||(15928615-15928704)
chr1 (49-195)||(26980295-26980442)
chr1 (72-197)||(29673498-29673624)
chr1 (143-197)||(12767359-12767413)
chr1 (67-120)||(18157056-18157110)
chr1 (91-197)||(51732320-51732426)
chr1 (49-185)||(3872677-3872813)
chr1 (107-156)||(5848104-5848153)
chr1 (49-197)||(6133656-6133804)
chr1 (95-156)||(28218120-28218181)
chr1 (96-232)||(11987674-11987810)
chr1 (143-211)||(33059910-33059978)
[»] scaffold0543 (1 HSPs)
scaffold0543 (72-187)||(9687-9803)
[»] scaffold0492 (1 HSPs)
scaffold0492 (72-187)||(11233-11349)
[»] chr8 (13 HSPs)
chr8 (65-232)||(1977169-1977337)
chr8 (49-232)||(16983394-16983578)
chr8 (50-181)||(32072098-32072230)
chr8 (66-181)||(9952804-9952920)
chr8 (49-196)||(28413901-28414049)
chr8 (68-199)||(8903871-8904003)
chr8 (112-211)||(5979944-5980042)
chr8 (143-208)||(7493362-7493427)
chr8 (49-181)||(8914771-8914904)
chr8 (49-197)||(43506538-43506684)
chr8 (74-156)||(13407396-13407479)
chr8 (95-197)||(17499264-17499366)
chr8 (143-219)||(4675001-4675077)
[»] chr5 (10 HSPs)
chr5 (49-211)||(28490739-28490902)
chr5 (66-179)||(25630824-25630938)
chr5 (68-181)||(34368379-34368493)
chr5 (50-197)||(28223807-28223955)
chr5 (107-183)||(25919270-25919346)
chr5 (65-233)||(34384686-34384855)
chr5 (107-211)||(41330410-41330514)
chr5 (122-199)||(34479980-34480057)
chr5 (104-197)||(37455405-37455497)
chr5 (95-183)||(5413782-5413870)
[»] scaffold0057 (1 HSPs)
scaffold0057 (91-185)||(42969-43064)
[»] scaffold0018 (1 HSPs)
scaffold0018 (95-195)||(27859-27959)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 45270783 - 45270488
Alignment:
Q  1 gttttagtcatgaatcgtgactattctataaacctttagaaccaaaatgaatgctatcaacatccacttttcaacactttctctaacactacttttttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  45270783 gttttagtcatgaatcgtgactattctataaacctttagaaccaaaatgaatgctatcaacattcacttttcaacattttctctaacactacttttttat 45270684  T
Q  101 tgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaac 200  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  45270683 tggataaaattaatgtatgtatcactattttgtgtgaattcgattttgaaagtgtaaactcacaatgatttaaaccaataaaaatttaagtattagaaac 45270584  T
Q  201 tgtgttcaaaatatagtgtcactagcattacttgtataaccaaaatattattacatcatgataaatgctatcaacactctctcaaacagtcactct 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  45270583 tgtgttcaaaatatagtgtcactagcattacttgtataaccaaaatactattacatcatgataaatactatgaacactctctcaaacggtcactct 45270488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 38464158 - 38464326
Alignment:
Q  44 aaaatgaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcg 142  Q
    |||| ||||||||  ||||| |||||||||||||| ||||| ||| | |||||||||||| || |||| ||||||||| |||  | |||| |||| |||     
T  38464158 aaaaggaatgctaagaacattcacttttcaacactctctctgacaattacttttttattgtatgaaatcaatgtatgtctcatcactttgcgtgggttca 38464257  T
Q  143 attttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    ||||| |||||||| || ||||||| ||||||||||||| ||| ||||||||||| |  ||||||||||    
T  38464258 attttcaaagtgtagacccacaatgatttaaaccaataagagagtaagtattagagagagtgttcaaaa 38464326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 26767941 - 26767757
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||| | |||||| |||| ||| ||||| || || |||| |||||||||  ||| | |||||| || ||| |||||    
T  26767941 gaatgctagcaacactcacttttcaacattctctctagcacttactcttttactggatgaaatcaatgtatgtcccaccactttgtgagggttcaatttt 26767842  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
     ||| |||| |||||||||| ||||||||||||||||| | ||||||||| |  |||||||||| | |||||  |||||||||||    
T  26767841 caaattgtagactcacaatgatttaaaccaataaaagagtgagtattagatagagtgttcaaaagaaagtgttgctagcattact 26767757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 34142302 - 34142186
Alignment:
Q  66 acttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcaca 164  Q
    ||||||||||| | |||| |||| | |||||||||||| || ||||| |||||||| |||||| ||||||||| ||| ||||| |||||||| | |||||    
T  34142302 acttttcaacaatctctcaaacattcacttttttattggatgaaattcatgtatgtctcactactttgtgtgggttcaattttcaaagtgtagagtcaca 34142203  T
Q  165 atggtttaaaccaataa 181  Q
    |||||||||||||||||    
T  34142202 atggtttaaaccaataa 34142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 36472002 - 36471869
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    |||||||||||||| ||||| ||||| | | | |||||| || |||| || |||||| |||| | ||| | ||||||| ||||| ||| |||||||||||    
T  36472002 cacttttcaacactctctctgacactcaatctcttattggatgaaatcaaagtatgtctcaccactttttatggattcaattttcaaaatgtaaactcac 36471903  T
Q  164 aatggtttaaaccaataaaagattaagtattaga 197  Q
    |||| ||||||||||||||||| | |||||||||    
T  36471902 aatgatttaaaccaataaaagagtgagtattaga 36471869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 10981534 - 10981667
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||| |||||| ||||||||||| |||||| |||||||| |||  |||||||||  ||| | ||||||||| ||| ||||  || ||||| || |||    
T  10981534 cacttttgaacactctctctaacactcacttttctattgaatgaaaaaaatgtatgtcccaccactttgtgtgggttctatttccaatgtgtagacccac 10981633  T
Q  164 aatggtttaaaccaataaaagattaagtattaga 197  Q
    |||| ||||||||||||| ||| | |||||||||    
T  10981634 aatgatttaaaccaataagagagtgagtattaga 10981667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 18511389 - 18511256
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||| |||||| || ||| |||| ||| |||||||| ||||||| |||||||||  ||||||||| ||||| ||| |||||    
T  18511389 gaatgctagcaacactcactttttaacactctcactatcactcactcttttattggataaaatcaatgtatgtcccactattttatgtgggttcaatttt 18511290  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataa 181  Q
     |||||| | ||  |||||| |||||||||||||    
T  18511289 caaagtgaagacctacaatgttttaaaccaataa 18511256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 25730602 - 25730482
Alignment:
Q  66 acttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcaca 164  Q
    |||||| |||||| | ||||||||| |||||||||||| ||  |||  |||||||| |||| || || ||||| ||| ||||| || |||||||||||||    
T  25730602 acttttgaacactctttctaacactcacttttttattggatggaatacatgtatgtctcaccatattatgtgggttctatttttaacgtgtaaactcaca 25730503  T
Q  165 atggtttaaaccaataaaaga 185  Q
     || |||||||||||||||||    
T  25730502 gtgatttaaaccaataaaaga 25730482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 9470100 - 9470214
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    |||||||| || ||||||||||| ||| |||||||| || |||| |||||||||  ||| | ||||| ||| ||| ||||| |||||||| || ||||||    
T  9470100 ttttcaacgctctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtagacccacaat 9470199  T
Q  167 ggtttaaaccaataa 181  Q
    | |||||||||||||    
T  9470200 gatttaaaccaataa 9470214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 35316534 - 35316397
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatt 194  Q
    |||||||  |||||||||||||||||  ||| ||||| ||| ||||| ||||| ||| |||| || ||||||| |||||| |||||| ||| | |||||     
T  35316534 ttttattagataaaattaatgtatgtcccaccattttatgttgattcaatttttaaattgtagacccacaatgatttaaatcaataagagagtgagtatc 35316435  T
Q  195 agaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    | |||  ||| |||||| | ||||| ||||||||||||    
T  35316434 ataaagagtgctcaaaagagagtgttactagcattact 35316397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 30718428 - 30718372
Alignment:
Q  127 attttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaa 183  Q
    ||||||||||||||  ||||| |||||||| |||||||||| |||||||||||||||    
T  30718428 attttgtgtggattgtattttcaaagtgtagactcacaatgatttaaaccaataaaa 30718372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 32856256 - 32856144
Alignment:
Q  107 aaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgtt 206  Q
    |||||||| ||||| |||| | ||||||||| ||  ||||| |||||||| |  || | || ||||||||||||| ||||| |||||||||||  |||||    
T  32856256 aaattaatatatgtttcaccactttgtgtgggttgaattttcaaagtgtagatccatagtgatttaaaccaataagagattgagtattagaaagggtgtt 32856157  T
Q  207 caaaatatagtgt 219  Q
    ||||||| |||||    
T  32856156 caaaatagagtgt 32856144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 6980299 - 6980116
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttg 148  Q
    ||||||| |||||| |||||||||||||| |||||| |||| ||| |||||||| || |||| || ||||||   || | ||||||||  ||| |||||     
T  6980299 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatcaaggtatgttctaccactttgtgtgagttcaattttc 6980200  T
Q  149 aaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    ||||| || || ||||||| ||| ||| ||||| ||| | ||||||||| |  |||||||||| | |||||  | |||||||||    
T  6980199 aaagtatagacccacaatgatttcaactaataagagagtgagtattagagaaagtgttcaaaagagagtgttgcaagcattact 6980116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 12989191 - 12989354
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| ||| |  |||| ||| ||| |||| || |||| |||||||||  ||| | ||||| ||||||| ||||     
T  12989191 gaatgctagcaacactcacttttcaacactctctttctcactcactctttcattggatgaaatcaatgtatgtcccaccactttgtatggattctatttc 12989290  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
      ||||||| || ||||||| ||||||||||||| ||| | ||||||||| |  ||||||||||    
T  12989291 cgaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaa 12989354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 7919369 - 7919307
Alignment:
Q  129 tttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagt 191  Q
    ||||||||||||| ||||| |||||||| |  ||||||| ||||||||||||| ||| |||||    
T  7919369 tttgtgtggattcaattttcaaagtgtagatccacaatgatttaaaccaataagagagtaagt 7919307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 45554567 - 45554639
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgt 120  Q
    |||||||| |||||  |||||||||||||| |||||| |||| ||| |||||||| || |||| |||||||||    
T  45554567 gaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgt 45554639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 5106314 - 5106461
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||  ||| | |||||||||  || ||||| |||||||| || |||    
T  5106314 cacttttcaacactttctctaacactcacttttttattggataaaatcaatgtatgtcccaccactttgtgtgggatcaattttcaaagtgtacacccac 5106413  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    || | ||||||||||||| ||| | | ||||||| | |||||||||||    
T  5106414 aaggatttaaaccaataatagagtgaatattagagagtgtgttcaaaa 5106461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 34905337 - 34905516
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttg 148  Q
    ||||||| |||||  || ||||||||||| ||||||||||| ||| |||||||| || |||| |||||||||  ||| | ||||| ||| ||| |||||     
T  34905337 aatgctagcaacactcatttttcaacactctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttc 34905436  T
Q  149 aaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcat 228  Q
    |||||||| || ||||||| ||||||||||||| ||| | ||||||||| |  |||||||||| | |||||  |||||||    
T  34905437 aaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgttcaaaagagagtgttgctagcat 34905516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 445837 - 445967
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    ||||||||||| |||||| |||| |||||||||||| || |||| |||||||||  ||| | ||||||||| ||| ||||| ||||| || | |||||||    
T  445837 ttttcaacactatctctagcactcacttttttattggatgaaatcaatgtatgtcacaccactttgtgtgggttcaattttcaaagtctagagtcacaat 445936  T
Q  167 ggtttaaaccaataaaagattaagtattaga 197  Q
    | ||||||||||||| ||| | |||||||||    
T  445937 gatttaaaccaataagagaatgagtattaga 445967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 10133322 - 10133191
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    |||||||||||||| ||||||||||| |||  ||||||| || |||||| |||||||  ||| | ||| || || ||| ||||| |||||||| |  |||    
T  10133322 cacttttcaacactctctctaacactcactcatttattggatgaaattattgtatgtcccaccactttatgggggttcaattttcaaagtgtagaaccac 10133223  T
Q  164 aatggtttaaaccaataaaagattaagtatta 195  Q
    |||| ||||||||||||||||| | |||||||    
T  10133222 aatgatttaaaccaataaaagagtgagtatta 10133191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 31116288 - 31116155
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||| |||||| ||||||||| | ||| || ||||| || |||| |||||||||  ||||| ||||||||  ||| ||||  || |||||||| |||    
T  31116288 cacttttgaacactctctctaacattcactcttctattggatgaaatcaatgtatgtcccactactttgtgtgtgttctatttccaatgtgtaaacccac 31116189  T
Q  164 aatggtttaaaccaataaaagattaagtattaga 197  Q
    |||| ||||||||||||| ||| | |||||||||    
T  31116188 aatgatttaaaccaataagagagtgagtattaga 31116155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 1392673 - 1392811
Alignment:
Q  93 ttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagta 192  Q
    |||||||||| || |||| ||||||||| |||||| ||||| ||  ||| ||||| ||| ||||  | ||||||| ||||||||||||| ||| | ||||    
T  1392673 ttttttattggatgaaatcaatgtatgtctcactactttgtatgtgttcaatttttaaaatgtagcc-cacaatgatttaaaccaataagagagtgagta 1392771  T
Q  193 ttagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    ||||| |  |||||||||| | |||||  |||||||||||    
T  1392772 ttagatagggtgttcaaaagagagtgttgctagcattact 1392811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 13001690 - 13001829
Alignment:
Q  47 atgaatgctatcaacatccacttttcaacactttctctaacactactttttt-attgaataaaattaatgtatgtatcactattttgtgtggattcgatt 145  Q
    ||||||||||  ||||  ||||||||| |||| ||||||||| |  |||||| |||| ||||||| |||||||||  ||  ||||| ||||||||| |||    
T  13001690 atgaatgctagtaacactcacttttcagcactctctctaacattcattttttcattggataaaataaatgtatgtcacatcattttatgtggattcaatt 13001789  T
Q  146 ttgaaagtgtaaactcacaatggtttaaaccaataaaaga 185  Q
    |  ||| |||||||  | || | |||||||||||||||||    
T  13001790 tgcaaaatgtaaacctataaagatttaaaccaataaaaga 13001829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 12780875 - 12780806
Alignment:
Q  112 aatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataa 181  Q
    ||||||||| |||||| ||||||| | ||| ||||| |||||||| |  ||||||| |||||||||||||    
T  12780875 aatgtatgtctcactactttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataa 12780806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 17144809 - 17144704
Alignment:
Q  90 tacttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaa 189  Q
    |||| ||||||||||| |||| ||| |||||  |||  |||||||| | ||  ||||| |||||||| || ||||||| ||||||| |||||| || |||    
T  17144809 tactattttattgaatgaaatcaatatatgttccaccgttttgtgtaggttaaattttcaaagtgtagacccacaatgatttaaactaataaaggagtaa 17144710  T
Q  190 gtatta 195  Q
    ||||||    
T  17144709 gtatta 17144704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 232
Target Start/End: Original strand, 50164411 - 50164579
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||| |||||| |||||| |||| |||  ||||||| ||||||| ||||||| |  ||| |||||||| || ||| ||||| |||||||| ||||||    
T  50164411 cactttttaacactctctctagcactcactcatttattggataaaatcaatgtatctcccaccattttgtgggggttcaattttcaaagtgtagactcac 50164510  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    |||| ||||||||||||| | | | || |||||| |  |||||||||| ||||||| ||||||||||||    
T  50164511 aatgatttaaaccaataagaaagtgagcattagagagagtgttcaaaagatagtgttactagcattact 50164579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 8108957 - 8109140
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttg 148  Q
    ||||||| |||||  |||||||||||||| |||||| |||| ||| ||||||||  | |||| |||||||||  ||||| |||||||   ||| |||||     
T  8108957 aatgctagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccactaatttgtgtttgttcaattttc 8109056  T
Q  149 aaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    |||||||| || ||||||| ||||||||||||| | | | ||||||||| |  |||||||||| | |||||  |||||||||||    
T  8109057 aaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagcattact 8109140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 754743 - 754597
Alignment:
Q  66 acttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcaca 164  Q
    ||||||||||||||||||||||||| |||||||||||| || || | || ||||||  ||| | |||||||   ||| ||||| |||||||| || ||||    
T  754743 acttttcaacactttctctaacactcacttttttattggatgaactcaaagtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccaca 754644  T
Q  165 atggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    ||| ||||||||||||| ||| | ||||||||| |  ||||||||||    
T  754643 atgatttaaaccaataagagagtgagtattagagagagtgttcaaaa 754597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 208
Target Start/End: Complemental strand, 34129580 - 34129420
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    ||||| || |||||| |||||||||| ||| |||||| |||| ||| || ||||| || | || ||||||| |  ||| | ||||||||  ||| |||||    
T  34129580 gaatggtagcaacattcacttttcaaaactctctctagcactcactcttctattggatgagatcaatgtatatcccaccactttgtgtgtgttcaatttt 34129481  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttca 208  Q
     |||||||  |||||||||||||||||||||||||||| | ||||||||| | ||||||||    
T  34129480 caaagtgtggactcacaatggtttaaaccaataaaagagtgagtattagagattgtgttca 34129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 24938548 - 24938411
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatt 194  Q
    |||||||| ||  ||| |||||||||  ||| ||||||| ||||||| ||||| |||||||| ||  |||||| ||||||||||||| ||| ||||||||    
T  24938548 ttttattggatgtaatcaatgtatgtcccaccattttgtttggattcaatttttaaagtgtagacctacaatgatttaaaccaataagagagtaagtatt 24938449  T
Q  195 agaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    ||| |  ||||| |||| ||| |||  |||||||||||    
T  24938448 agagaaagtgttgaaaagataatgttgctagcattact 24938411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 33996097 - 33995985
Alignment:
Q  67 cttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaa 165  Q
    |||||||||||  ||||||||| | ||| ||||||| ||| |||| ||||||||| |||| | ||| ||||| ||| ||||| ||| | |||||||||||    
T  33996097 cttttcaacacactctctaacattcactcttttattaaatcaaatcaatgtatgtctcaccactttttgtgggttcaattttcaaaatttaaactcacaa 33995998  T
Q  166 tggtttaaaccaa 178  Q
    |||||||||||||    
T  33995997 tggtttaaaccaa 33995985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 46287457 - 46287573
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    |||||||||| | ||| |||| |||| ||| |||||||| || |||||||| ||||| | |||| |||||||| |||| ||||| |||||||  ||||||    
T  46287457 cacttttcaatattttttctagcacttactattttattggatgaaattaatatatgtcttactactttgtgtgtattcaattttcaaagtgttgactcac 46287556  T
Q  164 aatggtttaaaccaata 180  Q
    |||| ||||||||||||    
T  46287557 aatgatttaaaccaata 46287573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 722177 - 722320
Alignment:
Q  69 tttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatg 167  Q
    |||||||||| |||||| |||| |||||||||||| || |||| || ||||||  ||| | |||||||   ||| ||||| |||||||| || |||||||    
T  722177 tttcaacactctctctagcactcacttttttattggatgaaatcaaagtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccacaatg 722276  T
Q  168 gtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
     ||||||||||||| ||| | ||||||||| |  ||||||||||    
T  722277 atttaaaccaataagagagtgagtattagagagagtgttcaaaa 722320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 24834579 - 24834711
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttg 148  Q
    ||||||| |||||  |||||||  ||||| |||||||| || || ||||||||| ||  ||| |||||||||  ||| ||||||||||| ||| |||||     
T  24834579 aatgctagcaacactcactttttgacactctctctaacgctcacatttttattggatggaatcaatgtatgtcccaccattttgtgtgggttcaattttc 24834678  T
Q  149 aaagtgtaaactcacaatggtttaaaccaataa 181  Q
    |||||||| || ||||||  |||||||||||||    
T  24834679 aaagtgtagacccacaataatttaaaccaataa 24834711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 232
Target Start/End: Original strand, 43771142 - 43771310
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||| |||||| ||||||  ||| ||| |||||||| || |||| |||||||||  ||| | | ||||||| ||| ||||| |||||||| || |||    
T  43771142 cacttttgaacactctctctatgactcactcttttattggatgaaatcaatgtatgtcccaccactctgtgtgggttcaattttcaaagtgtagacccac 43771241  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    |||| ||||||||||||| ||| | ||||||| | |  |||||||||| | || ||  |||||||||||    
T  43771242 aatgatttaaaccaataagagagtgagtattaaagagggtgttcaaaagagagcgttgctagcattact 43771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 47009208 - 47009352
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    ||||||||||| | |||| |||| ||| |||||||| ||||||||||||| ||| ||||   ||||||||  ||| ||||| |||||||| |  ||||||    
T  47009208 ttttcaacactctttctagcactcactcttttattggataaaattaatgtttgtctcaccgctttgtgtgagttcaattttcaaagtgtagatacacaat 47009307  T
Q  167 ggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    | ||||||||||||| | | | ||||||||| |  ||||||||||    
T  47009308 gatttaaaccaataagaaagtgagtattagagagggtgttcaaaa 47009352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 5044677 - 5044583
Alignment:
Q  91 acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaaga 185  Q
    |||||||||||| || |||| ||| |||||  ||||||||||||||  ||| ||||| ||| |||| || ||||| | |||||||||||||||||    
T  5044677 acttttttattggatgaaatcaatatatgtcacactattttgtgtgagttcaatttttaaaatgtagacccacaacgatttaaaccaataaaaga 5044583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 26329383 - 26329501
Alignment:
Q  67 cttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaa-actcaca 164  Q
    ||||| || ||||||| ||||||| ||||| |||||| ||||||||||||||||| | || |||||  ||||| || ||||  ||||||||| ||||| |    
T  26329383 cttttaaatactttctttaacacttactttcttattggataaaattaatgtatgttttaccattttaagtggaatccatttcaaaagtgtaagactcata 26329482  T
Q  165 atggtttaaaccaataaaa 183  Q
     || |||||||||||||||    
T  26329483 ttgatttaaaccaataaaa 26329501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 49077296 - 49077382
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataa 181  Q
    |||||||  ||||||||||| |||||  ||| | ||||||||| ||| ||||| |||||||| || ||||||| |||||||||||||    
T  49077296 ttttattagataaaattaatatatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaatgatttaaaccaataa 49077382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 45081843 - 45081771
Alignment:
Q  127 attttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaa 199  Q
    ||||||||||| | | ||||  |||||||| |||||||||  ||||||||||||||||| | |||||||||||    
T  45081843 attttgtgtgggtcctatttccaaagtgtacactcacaataatttaaaccaataaaagagtgagtattagaaa 45081771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 22542422 - 22542552
Alignment:
Q  89 ctacttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagatta 188  Q
    ||||| ||||||||||| |||| || ||||||  ||| | ||||||||| ||| ||||| ||||  ||  | ||||||| ||||||| ||||| ||| |     
T  22542422 ctactcttttattgaatgaaatcaaagtatgttccaccactttgtgtgggttcaattttcaaagaatagtcccacaatgatttaaactaataagagagtg 22542521  T
Q  189 agtattagaaactgtgttcaaaatatagtgt 219  Q
    ||||||| |||  |||||||||| |||||||    
T  22542522 agtattaaaaagagtgttcaaaagatagtgt 22542552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 37451098 - 37451044
Alignment:
Q  143 attttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    ||||| |||||||| |||| ||||| ||||||||||||||||| | |||||||||    
T  37451098 attttcaaagtgtagactcgcaatgatttaaaccaataaaagagtgagtattaga 37451044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 26361409 - 26361304
Alignment:
Q  127 attttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagc 226  Q
    ||||||||||| ||| || || |||||||| || || |||| |||||||||||||  || | ||||||||| |  |||||||||| | |||||  |||||    
T  26361409 attttgtgtgggttcaatattcaaagtgtagacccataatgatttaaaccaataagtgagtgagtattagagagggtgttcaaaagagagtgttgctagc 26361310  T
Q  227 attact 232  Q
    ||||||    
T  26361309 attact 26361304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 39471157 - 39471306
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacacta-cttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||| || ||| ||| |||||| | || |||||||  || |||| |||||||||  ||| | ||||||| | ||| || ||    
T  39471157 gaatgctagcaacactcacttttaaatactctctttaacaccaactcttttattagatgaaatcaatgtatgtcccaccactttgtgttggttcaatctt 39471256  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
     |||||||| || ||||||| ||||||||||||| ||| | |||||||||    
T  39471257 caaagtgtagacccacaatgatttaaaccaataagagagtgagtattaga 39471306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 45311047 - 45310979
Alignment:
Q  129 tttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    |||||| |||||| ||||| |||||| | ||| |||||| |||||| |||||| ||| |||||||||||    
T  45311047 tttgtggggattcaattttcaaagtgaagacttacaatgatttaaatcaataagagagtaagtattaga 45310979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 44350965 - 44350819
Alignment:
Q  66 acttttcaacactttctctaaca-ctacttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcaca 164  Q
    ||||||||||||||||||||||| | |||||||||||| || |||| ||||||||| ||   | ||||| | | ||| ||||| |||||||| |||||||    
T  44350965 acttttcaacactttctctaacatccacttttttattggatcaaatcaatgtatgtctcgtcactttgtttaggttcaattttcaaagtgtagactcaca 44350866  T
Q  165 atggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    ||| |||||||||| |||||| | ||||||||| |  ||||||||||    
T  44350865 atgatttaaaccaacaaaagagtgagtattagagatggtgttcaaaa 44350819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 31502644 - 31502511
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||| | ||||||||||| ||| |||||||| || |||| || ||||||  ||| ||||||||||  ||| |||||    
T  31502644 gaatgctagcaacactcacttttcaacagtctctctaacactcactcttttattggatgaaatcaaggtatgtcccaccattttgtgtgcgttcaatttt 31502545  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataa 181  Q
     |||||||| |||||||||| |||||||||||||    
T  31502544 caaagtgtagactcacaatgatttaaaccaataa 31502511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 6442184 - 6442349
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    ||||||||||| |||||| |||| | |  ||||||| || |||| |||||||||  ||| |||||||| |||||| ||||| |||||||| || ||||||    
T  6442184 ttttcaacactctctctatcactcagtcatttattgtatgaaatcaatgtatgttccaccattttgtggggattcaattttcaaagtgtagacccacaat 6442283  T
Q  167 ggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    | ||||||||||||||||| | ||||||| | |  |||||||||| | |||||  ||| |||||||    
T  6442284 gatttaaaccaataaaagagtgagtattaaagatagtgttcaaaagaaagtgttgctaacattact 6442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 39254084 - 39254216
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttg 148  Q
    ||||||| |||||| |||||||||||| | ||| || |||| ||| |||||||||||||||||||||||||| |||| | ||||||| | ||| |||||     
T  39254084 aatgctagcaacattcacttttcaacattctctatagcactcactcttttattgaataaaattaatgtatgtttcaccactttgtgttggttcaattttt 39254183  T
Q  149 aaagtgtaaactcacaatggtttaaaccaataa 181  Q
    ||| |||| || ||||||  |||||| ||||||    
T  39254184 aaaatgtagacccacaataatttaaatcaataa 39254216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 232
Target Start/End: Original strand, 46517291 - 46517475
Alignment:
Q  47 atgaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatt 145  Q
    |||||||||| |||||  ||||||| ||||||  ||||| |||| |||  ||||||| ||||||| ||||||| |  ||| ||| |||| || ||| |||    
T  46517291 atgaatgctagcaacactcactttttaacact--ctctagcactcactcatttattggataaaatcaatgtatatcccaccattctgtgggggttcaatt 46517388  T
Q  146 ttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    || |||||||| |||||||||| ||||||||||||| ||| | ||||||||| |   ||||||||| | |||||  |||||||||||    
T  46517389 ttcaaagtgtagactcacaatgatttaaaccaataagagaatgagtattagagaggctgttcaaaagagagtgttgctagcattact 46517475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 22189958 - 22190123
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    ||||||||||| |||||| |||| ||| |||||||| || |||| ||||||||   ||| | ||||||||| ||| ||||| |||||||| || | ||||    
T  22189958 ttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatggcccaccactttgtgtgggttcaattttcaaagtgtagacccgcaat 22190057  T
Q  167 ggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    | |||||||||||||| || | ||||||||| |  |||||||||| | |||||   ||||||||||    
T  22190058 gatttaaaccaataaacgagtgagtattagagagggtgttcaaaagagagtgttgttagcattact 22190123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 11824090 - 11824204
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    |||||||| || |||||| |||| ||| |||||||| || |||| |||||||||  ||| ||||||||| | ||| ||||| ||||||||||| ||||||    
T  11824090 ttttcaacgctctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccattttgtgtagcttcaattttcaaagtgtaaacccacaat 11824189  T
Q  167 ggtttaaaccaataa 181  Q
    | |||||| ||||||    
T  11824190 gatttaaatcaataa 11824204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 27888282 - 27888415
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||| | |||| ||||||||||| ||  | | |||| ||||||| |||||||||  ||| | ||||||||| ||| |||||    
T  27888282 gaatgctagcaacactcacttttgagcactctctctaacactcaccctctcattggataaaatcaatgtatgtcccaccactttgtgtgggttcaatttt 27888381  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataa 181  Q
     |||||||| || ||||||| |||||||||||||    
T  27888382 taaagtgtagacccacaatgatttaaaccaataa 27888415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 33008104 - 33008241
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||| |||||| |||||| |||| ||| |||||||| || |||| | |||||||  ||| | ||||||||| ||| ||||     
T  33008104 gaatgctagcaacactcacttttgaacactatctctagcactcactcttttattggatgaaatcattgtatgtcccaccactttgtgtgggttctatttc 33008203  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaaga 185  Q
     || ||||| || ||||||| |||||||||||||||||    
T  33008204 caatgtgtagacccacaatgatttaaaccaataaaaga 33008241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 10934098 - 10933998
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatt 194  Q
    |||||||| ||||||||||| ||||| |||| | ||||| ||| ||| ||||  ||||| ||||| ||||||| ||||||| ||||| ||||| ||||||    
T  10934098 ttttattggataaaattaatatatgtctcaccactttgtatggtttctatttccaaagtataaacccacaatgatttaaactaataagagattgagtatt 10933999  T
Q  195 a 195  Q
    |    
T  10933998 a 10933998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 36845701 - 36845569
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    ||||| || |||||| || ||||||||||||||| || | || ||| ||||||||||| |||| ||| ||| | |||| | ||||||||| ||| |||||    
T  36845701 gaatgttagcaacattcatttttcaacactttctttatcgctcactcttttattgaatgaaatcaatatat-tctcaccaatttgtgtgggttcaatttt 36845603  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataa 181  Q
     ||||| || || ||||||| |||||||||||||    
T  36845602 caaagtatagacccacaatgatttaaaccaataa 36845569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 11692226 - 11692342
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatt 194  Q
    |||||||| || |||| |||||||||   || | ||||||| | ||| ||||| |||||||||||||||| || ||||||| ||||  ||| | ||||||    
T  11692226 ttttattggatgaaatcaatgtatgtcctaccactttgtgtaggttcaattttcaaagtgtaaactcacagtgatttaaactaatatgagagtgagtatt 11692325  T
Q  195 agaaactgtgttcaaaa 211  Q
    ||| | |||||||||||    
T  11692326 agagagtgtgttcaaaa 11692342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 27320226 - 27320294
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgta 117  Q
    ||||||| |||||| || ||||||||||| |||| |||||| ||| |||||||||||||||| ||||||    
T  27320226 aatgctagcaacattcatttttcaacactctctccaacactcactcttttattgaataaaatcaatgta 27320294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 14795131 - 14795294
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| |||||| || | |||||||||||| || |||| |||||||||  ||| | ||| ||| | ||| |||||    
T  14795131 gaatgctagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgtatgtcccaccaatttttgttggttcaatttt 14795230  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
     |||||||| |  || |||| ||||||| ||||| ||| | ||||| ||| |  ||||||||||    
T  14795231 taaagtgtatatccataatgatttaaactaataagagagtgagtataagagagagtgttcaaaa 14795294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 15242123 - 15242286
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| |||||| || | |||||||||||| || |||| |||||||||  ||| | ||| ||| | ||| |||||    
T  15242123 gaatgctagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgtatgtcccaccaatttttgttggttcaatttt 15242222  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
     |||||||| |  || |||| ||||||| ||||| ||| | ||||| ||| |  ||||||||||    
T  15242223 taaagtgtatatccataatgatttaaactaataagagagtgagtataagagagagtgttcaaaa 15242286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 32605390 - 32605457
Alignment:
Q  107 aaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaa 174  Q
    |||| ||||||||| ||| || ||||||||||||| ||||| ||||||||  ||||||||| ||||||    
T  32605390 aaatcaatgtatgtctcattactttgtgtggattcaatttttaaagtgtaggctcacaatgatttaaa 32605457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 27949289 - 27949454
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||| |||||| ||||||||||| ||| || ||||| || |||| ||  |||||   || ||||||||||  ||| | ||| |||||||| || |||    
T  27949289 cactttttaacactctctctaacactcactcttgtattggatgaaatcaagttatgtcctaccattttgtgtgagttcaaatttcaaagtgtagacccac 27949388  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcatt 229  Q
    |||| ||||||| ||||| ||| | ||||||||| |  |||||||||| | |||||  ||||||||    
T  27949389 aatgatttaaactaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 27949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 52124136 - 52123954
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||| ||| || |||||| |||| |||| ||| ||| || ||||||||||||||  |||||||||||| || ||| |||||    
T  52124136 gaatgctagcaacactcactttttaacgctctctctagcactcacttatttgttggatgaaattaatgtatgtcccactattttgtgggggttcaatttt 52124037  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcatta 230  Q
     |||||||| || ||||||| ||||||||||||| | | | ||||||||| |  |||||||||| | |||||  |||||||||    
T  52124036 caaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagcatta 52123954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 138810 - 138910
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatt 194  Q
    ||||||||||| |||| ||||||||| |||| ||||||| || |||| ||||| ||| |||||||| |||||| |||||| |||||||||| ||||||||    
T  138810 ttttattgaatgaaatcaatgtatgtctcaccattttgtatgtattcaatttttaaaatgtaaacttacaatgatttaaatcaataaaagagtaagtatt 138909  T
Q  195 a 195  Q
    |    
T  138910 a 138910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 28529253 - 28529414
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| |||||| |||| ||| |||||||| || |||| |||||||||  ||| | |  |||||| ||| |||||    
T  28529253 gaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccact--gtgtgggttcaatttt 28529350  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
     |||||||| || ||||||| ||||||||||||| ||| | ||||||||| |  ||||||||||    
T  28529351 caaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgttcaaaa 28529414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 10948724 - 10948593
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||||||||||||||| | |||| |||| ||||||| |  | ||||||||||||  ||| | |||||||   ||| ||||| ||||||||||| |||    
T  10948724 cacttttcaacactttctcaagcactcacttctttattggacgatattaatgtatgttccaccactttgtgtttgttcaatttttaaagtgtaaacccac 10948625  T
Q  164 aatggtttaaaccaataaaagattaagtatta 195  Q
    |||| ||||||||||||||||| | |||||||    
T  10948624 aatgatttaaaccaataaaagagtgagtatta 10948593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 50156798 - 50156668
Alignment:
Q  90 tacttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaa 189  Q
    ||||| |||||||||| ||||||||||||||  ||| | |||| | || ||| ||||| |||||||| || ||||||| ||||||||||||| ||| | |    
T  50156798 tacttatttattgaatgaaattaatgtatgttccacaactttgcgggggttcaattttaaaagtgtagacccacaatgatttaaaccaataagagagtga 50156699  T
Q  190 gtattagaaactgtgttcaaaatatagtgtc 220  Q
    |||||| |||  |||||||||| | ||||||    
T  50156698 gtattacaaagagtgttcaaaagaaagtgtc 50156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 18427282 - 18427181
Alignment:
Q  96 tttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatta 195  Q
    ||||||| || |||| |||||||||  ||| ||||||||||| ||| ||||| |||||||| || ||||||| ||||||||||||| ||| | |||||||    
T  18427282 tttattggatgaaatcaatgtatgtcccaccattttgtgtgggttctattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtatta 18427183  T
Q  196 ga 197  Q
    ||    
T  18427182 ga 18427181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 37776883 - 37776699
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||||||||||||||| | |||| ||| |||||||  || |||| |||||||||   || | ||||||||| ||| |||||    
T  37776883 gaatgctagcaacactcacttttcaacactttctccagcactcactcttttattagatgaaatcaatgtatgtcctaccactttgtgtgggttcaatttt 37776784  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
     |||||||| ||  |||||| ||||||||| ||| ||| | ||||||||| |  ||||||| || | |||||  |||||||||||    
T  37776783 caaagtgtagacctacaatgatttaaaccactaagagagtgagtattagagagggtgttcataaaagagtgttgctagcattact 37776699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 20493625 - 20493462
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| ||||||||||| |||  ||||||| || |||| |||||||||   || | |||||| || ||| || ||    
T  20493625 gaatgctagcaacactcacttttcaacactctctctaacactcactcatttattggatgaaatcaatgtatgtcctaccactttgtgggggttcaatatt 20493526  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
     |||||||| || ||||||| ||||||||||||| ||| | |||| |||| |  ||||||||||    
T  20493525 caaagtgtagacccacaatgatttaaaccaataagagagtgagtaatagagagagtgttcaaaa 20493462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 29755500 - 29755633
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||| | ||| ||||||  ||| |||||| ||||| ||| ||| ||||| |||||| ||||||||| ||| |||||    
T  29755500 gaatgctagcaacactcacttttcaacattctctttaacacccactcttttatcgaatagaatcaatatatgtttcactactttgtgtgggttcaatttt 29755599  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataa 181  Q
     |||||||| |   |||||| |||||||||||||    
T  29755600 caaagtgtagatcaacaatgatttaaaccaataa 29755633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 41452059 - 41451894
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    |||||||||||||  ||||||  ||| ||| |||||||| || |||| || ||||||  ||| | ||||||||| ||| ||||| |||| ||| || |||    
T  41452059 cacttttcaacacaatctctagtactcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtagacccac 41451960  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcatt 229  Q
    |||| ||||||||||||| ||| | ||||||||| |  |||||||||| | |||||  ||||||||    
T  41451959 aatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 41451894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 19345132 - 19345032
Alignment:
Q  96 tttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatta 195  Q
    ||||||| || |||| |||||||||  ||| | |||||  || ||| ||||| ||| |||| |||||||||| ||||||||||||||||| |||||||||    
T  19345132 tttattggatgaaatcaatgtatgtcccaccactttgttggggttcaattttcaaattgtagactcacaatgatttaaaccaataaaagaataagtatta 19345033  T
Q  196 g 196  Q
    |    
T  19345032 g 19345032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 26310615 - 26310495
Alignment:
Q  60 acatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaa 158  Q
    |||| |||||||||||||| |||||| |||| ||| |||||||| || |||| |||||||||  ||| ||||| ||| | ||| ||||| |||||||| |    
T  26310615 acattcacttttcaacactctctctagcacttactcttttattggatgaaatcaatgtatgtcccaccattttttgttggttcaattttcaaagtgtaga 26310516  T
Q  159 ctcacaatggtttaaaccaat 179  Q
    | || |||| |||||||||||    
T  26310515 cccataatgatttaaaccaat 26310495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 15790533 - 15790466
Alignment:
Q  65 cacttttcaacactttctctaacac-tacttttttattgaataaaattaatgtatgtatcactatttt 131  Q
    |||||||||||||||| |||||||| ||||| ||||||| ||||||| ||||||||| |||| |||||    
T  15790533 cacttttcaacactttttctaacacttacttatttattggataaaatcaatgtatgtctcaccatttt 15790466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 30624631 - 30624719
Alignment:
Q  47 atgaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtg 136  Q
    |||||||||| |||||  ||||||| | ||||  |||||||||| ||| |||||||||||||||||||||||||| |||| | ||||||||    
T  30624631 atgaatgctagcaacactcacttttgagcact--ctctaacactcactcttttattgaataaaattaatgtatgtttcaccactttgtgtg 30624719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 24734721 - 24734886
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    |||||||||||||  ||||||  ||| ||| |||||||| || |||| || ||||||  ||| | ||||||||| ||| ||||| |||| |||  | |||    
T  24734721 cacttttcaacacaatctctagtactcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtaggcccac 24734820  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcatt 229  Q
    |||| ||||||||||||| ||| | ||||||||| |  |||||||||| | |||||  ||||||||    
T  24734821 aatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 24734886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 22604608 - 22604687
Alignment:
Q  96 tttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaac 175  Q
    ||||||| |||||||||||||||||  ||| |||||||| |  ||| ||||| ||| |||| |||||||||| |||||||    
T  22604608 tttattggataaaattaatgtatgtcccaccattttgtgggagttcaattttcaaaatgtagactcacaatgatttaaac 22604687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 46450146 - 46450215
Alignment:
Q  128 ttttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    |||||||||| ||| ||||  |||||||| || ||||||| ||||||||||||| ||| | |||||||||    
T  46450146 ttttgtgtgggttctatttgcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattaga 46450215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 5452240 - 5452132
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| ||| ||||| | ||| |||||||| || |||| ||||||| |  ||| | ||||||||||||| |||||    
T  5452240 gaatgctagcaacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatttcccaccactttgtgtggattcaatttt 5452141  T
Q  148 gaaagtgta 156  Q
      |||||||    
T  5452140 ctaagtgta 5452132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 55452114 - 55452046
Alignment:
Q  129 tttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    ||||||||| ||| ||||  |||||||| ||||| |||| ||||||||||| ||||| | |||||||||    
T  55452114 tttgtgtgggttctatttccaaagtgtagactcataatgatttaaaccaatgaaagagtgagtattaga 55452046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 8741360 - 8741254
Alignment:
Q  91 acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaag 190  Q
    |||||||||||| || |||| ||||||||| |||||| ||||||||| ||| ||||| ||||| ||||| ||||||| ||||||| ||||| ||| | ||    
T  8741360 acttttttattggatgaaatcaatgtatgtctcactaatttgtgtgggttcaattttcaaagtataaacacacaatgatttaaactaataagagagtgag 8741261  T
Q  191 tattaga 197  Q
    |||||||    
T  8741260 tattaga 8741254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 33193050 - 33193212
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||| ||| |||||||||||||| |||| | ||| ||| ||| |||| ||||||| || |||| |||||||||  ||| |||||||| || ||| |||||    
T  33193050 gaatactaacaacatccactttttaacattctctataatactcacttatttattggatgaaatcaatgtatgtgccaccattttgtgagggttcaatttt 33193149  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaa 210  Q
     |||||||| || ||||||| ||||||||||||| ||| | ||||||||| |  |||||||||    
T  33193150 caaagtgtagacccacaatgatttaaaccaataagagaatgagtattagagaaagtgttcaaa 33193212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 44271918 - 44272069
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||||||||||| |||||| ||| || |||| ||| ||||||||||| |||| |||||||||  ||| ||||| ||| | ||| |||||    
T  44271918 gaatgctagcaacatccacttttaaacactctctttagcacttactattttattgaatgaaatcaatgtatgttccaccattttttgtaggttcaatttt 44272017  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaa 199  Q
     |||||||| |   |||||| |||||| |||||||| | | |||||||||||    
T  44272018 caaagtgtagaacaacaatgatttaaatcaataaaaaaatgagtattagaaa 44272069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 931374 - 931525
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||||||| || ||||||| ||| ||| |||||||||||  ||  |||||||||  ||  ||||| ||||| ||| |||||    
T  931374 gaatgctagcaacactcacttttcaactctatctctaatactcactcttttattgaatggaagcaatgtatgtcccatcattttttgtgggttcaatttt 931473  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaa 199  Q
     ||| | || || ||||||| ||||||||||||||||| | | |||||||||    
T  931474 caaaatatacacccacaatgatttaaaccaataaaagagtgaatattagaaa 931525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 41958131 - 41958234
Alignment:
Q  96 tttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatta 195  Q
    ||||||| || |||| |||||||||  ||| |||||||| || ||| ||||| |||||||| || |||| || ||||||||||||| ||| | |||||||    
T  41958131 tttattggatgaaatcaatgtatgtcccaccattttgtgggggttcaattttcaaagtgtagacccacagtgatttaaaccaataagagagtgagtatta 41958230  T
Q  196 gaaa 199  Q
    ||||    
T  41958231 gaaa 41958234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 4394386 - 4394436
Alignment:
Q  67 cttttcaacactttctctaacactacttttttattgaataaaattaatgta 117  Q
    |||| |||||||||||||||||||  ||||||||| |||||||||||||||    
T  4394386 ctttacaacactttctctaacacttattttttattaaataaaattaatgta 4394436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 49730885 - 49730995
Alignment:
Q  70 ttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatgg 168  Q
    ||||||||| ||| ||||||| ||| |||||||  || ||| |||| |||||  ||||| ||||||||| ||| ||||| |||||||| || |||||||     
T  49730885 ttcaacactctctataacactcactcttttattagattaaactaatatatgtcacactactttgtgtgggttcaattttcaaagtgtagacccacaatga 49730984  T
Q  169 tttaaaccaat 179  Q
    |||||||||||    
T  49730985 tttaaaccaat 49730995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 15928615 - 15928704
Alignment:
Q  108 aattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    |||| |||||||| |||| ||||||||||  ||| ||||| || ||||| ||| ||| || ||||||||||||||||| | |||||||||    
T  15928615 aattcatgtatgtctcaccattttgtgtgagttctattttcaaggtgtagacttacagtgatttaaaccaataaaagagtgagtattaga 15928704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 26980442 - 26980295
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| ||||||| ||| ||| | |||||| || |||| |||||||||  ||| ||||||||||  ||| |||||    
T  26980442 gaatgctaacaacactcacttttcaacactctctctaatactcactctattattggatgaaatcaatgtatgtcccaccattttgtgtgagttcaatttt 26980343  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatta 195  Q
     ||| | || |  ||||||| |||||| |||||| ||| | |||||||    
T  26980342 caaaatatacatccacaatgatttaaatcaataagagagtgagtatta 26980295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 29673498 - 29673624
Alignment:
Q  72 caacactttctctaacactactt-ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgta-aactcacaatggt 169  Q
    ||||||| |||||||||||  || |||||||| ||||||| ||| |||||  ||| ||||||||| | ||| ||||| |||||||| |||| |||||  |    
T  29673498 caacactctctctaacactcattattttattggataaaatcaatatatgtcccaccattttgtgtagtttcaattttcaaagtgtagaact-acaattat 29673596  T
Q  170 ttaaaccaataaaagattaagtattaga 197  Q
    |||||||||||||| | | |||||||||    
T  29673597 ttaaaccaataaaaaagtgagtattaga 29673624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 12767413 - 12767359
Alignment:
Q  143 attttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    ||||| |||||||| ||||| |||| ||||||||||||||||| | |||||||||    
T  12767413 atttttaaagtgtagactcataatgatttaaaccaataaaagagtgagtattaga 12767359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 18157056 - 18157110
Alignment:
Q  67 cttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgt 120  Q
    |||||||||||| ||||||||||  |||||||||||| || ||||||||||||||    
T  18157056 cttttcaacactctctctaacacccacttttttattggatgaaattaatgtatgt 18157110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 51732320 - 51732426
Alignment:
Q  91 acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaag 190  Q
    |||||||||||  || |||||||||||| |  ||||| ||| ||||  ||  ||||| ||||| ||||| ||||||  ||||||||||||||||| | ||    
T  51732320 acttttttatttgatgaaattaatgtattttccactactttatgtgagtttaattttcaaagtataaacccacaataatttaaaccaataaaagagtgag 51732419  T
Q  191 tattaga 197  Q
    |||||||    
T  51732420 tattaga 51732426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 3872813 - 3872677
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| |||||| |||| ||| || |||| ||| |||| ||| |||||  ||| | ||||||| | ||| ||||     
T  3872813 gaatgctagcaacactcacttttcaacactctctctagcactcactcttctattaaat-aaatcaatatatgtcacaccactttgtgtaggttcaatttc 3872715  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaaga 185  Q
     |||||||| || ||||||| || ||||||||||||||    
T  3872714 caaagtgtagacccacaatgattcaaaccaataaaaga 3872677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 5848104 - 5848153
Alignment:
Q  107 aaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgta 156  Q
    |||||||||||||| |||||||||| ||||| ||| ||||| ||||||||    
T  5848104 aaattaatgtatgtctcactattttatgtgggttccatttttaaagtgta 5848153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 6133804 - 6133656
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||| | |||||| |||| ||  |||||||| || |||| ||| |||||  ||| || |||||||| ||| |||||    
T  6133804 gaatgctagcaacactcacttttcaacaatctctctagcactcacccttttattggatgaaatcaatatatgtcccaccatattgtgtgggttcaatttt 6133705  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
     ||||| || || |||||| | |||||||||||| ||| | |||||||||    
T  6133704 caaagtctacacccacaat-gattaaaccaataagagagtgagtattaga 6133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 28218181 - 28218120
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgta 156  Q
    |||||||| || |||| ||||||||| |||| | ||||||||||||| ||||| ||||||||    
T  28218181 ttttattggatgaaatcaatgtatgtctcaccactttgtgtggattcaattttcaaagtgta 28218120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 11987674 - 11987810
Alignment:
Q  96 tttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatta 195  Q
    ||||||| || ||||||||||||||  ||| | || ||| || ||| ||||| |||||||| || ||||||| ||||||||| ||| ||| |   |||||    
T  11987674 tttattggatgaaattaatgtatgttccaccacttagtgcgggttcaattttcaaagtgtagacccacaatgatttaaaccattaagagagtggatatta 11987773  T
Q  196 gaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    ||||  ||||| |||| | |||||  |||||||||||    
T  11987774 gaaagagtgtttaaaagagagtgttgctagcattact 11987810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 33059978 - 33059910
Alignment:
Q  143 attttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    ||||| |||||||| |||||||||| ||||||||||||| ||| |  ||| ||||||  ||||||||||    
T  33059978 atttttaaagtgtacactcacaatgttttaaaccaataagagagtgggtactagaaaaagtgttcaaaa 33059910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 9687 - 9803
Alignment:
Q  72 caacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtt 170  Q
    ||||||| ||||||||||| |||||||||||| || |||| ||||||| |  ||| ||||||||||| ||| ||||| |||||||| |||||||||  ||    
T  9687 caacactctctctaacactcacttttttattggatgaaatcaatgtatatcccaccattttgtgtgggttcaattttaaaagtgtagactcacaataatt 9786  T
Q  171 taaaccaataaaagatt 187  Q
    ||||| ||||| |||||    
T  9787 taaacgaataagagatt 9803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 11233 - 11349
Alignment:
Q  72 caacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtt 170  Q
    ||||||| ||||||||||| |||||||||||| || |||| ||||||| |  ||| ||||||||||| ||| ||||| |||||||| |||||||||  ||    
T  11233 caacactctctctaacactcacttttttattggatgaaatcaatgtatatcccaccattttgtgtgggttcaattttaaaagtgtagactcacaataatt 11332  T
Q  171 taaaccaataaaagatt 187  Q
    ||||| ||||| |||||    
T  11333 taaacgaataagagatt 11349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 1977337 - 1977169
Alignment:
Q  65 cacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||| |||||| |||||| |||| ||| || | ||| || |||| |||||||||   || | ||||||||| ||| ||||| |||||||| |  |||    
T  1977337 cactttttaacactctctctagcactcactcttctgttggatgaaatcaatgtatgtccaaccactttgtgtgggttcaattttcaaagtgtagatccac 1977238  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
    |||| ||||||||||||||||| | ||||||||| | ||||||||||| |  |||| ||||||||||||    
T  1977237 aatgatttaaaccaataaaagagtgagtattagagagtgtgttcaaaagagtgtgttactagcattact 1977169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 16983394 - 16983578
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| | |||| |||| |||  ||||||| ||||||| | | |||||  ||  | |||||| || ||| |||||    
T  16983394 gaatgctagcaacactcacttttcaacactctatctagcactcactgatttattggataaaatcattttatgtcccatcactttgtgggggttcaatttt 16983493  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattact 232  Q
     |||||||| |||||||||| ||||||||||||| ||| | ||||||||| |  |||||||||| | |||||  |||||||||||    
T  16983494 caaagtgtagactcacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcattact 16983578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 32072098 - 32072230
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttg 148  Q
    ||||||| |||||| |||||||||||||| |||||| |||| ||| |||||||| || |||| |||||||||  ||| | ||||||||| ||| |||||     
T  32072098 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatgaatgtatgtcccaccactttgtgtgggttcaattttt 32072197  T
Q  149 aaagtgtaaactcacaatggtttaaaccaataa 181  Q
    |||||||| || ||||||  |||||| ||||||    
T  32072198 aaagtgtagacccacaattatttaaatcaataa 32072230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 9952920 - 9952804
Alignment:
Q  66 acttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcaca 164  Q
    ||||||||||||| |||||| |||| | |||||||||| || |||| |||| ||||  ||| | ||||||||  ||| ||||| ||||||||||| ||||    
T  9952920 acttttcaacactctctctagcactcatttttttattggatgaaatcaatgcatgtcccaccactttgtgtgagttcaattttcaaagtgtaaacccaca 9952821  T
Q  165 atggtttaaaccaataa 181  Q
    ||| |||||||||||||    
T  9952820 atgatttaaaccaataa 9952804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 28414049 - 28413901
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||||||| |||||| | || |||||||||||  || |||| |||||||||  ||| | ||||||||  ||| |||||    
T  28414049 gaatgctaacaacactcacttttcaacactctctctagcgctcacttttttattcgatgaaatcaatgtatgtcccaccactttgtgtgagttcaatttt 28413950  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattag 196  Q
     ||||| || || || |||| ||||||||||||||||| | ||||||||    
T  28413949 caaagtatagacccataatgatttaaaccaataaaagaatgagtattag 28413901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 8903871 - 8904003
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    ||||||||||| ||||||  ||| |||| ||||||  || |||| |||||||||  ||| | ||||||| | ||| ||||| |||||||| || ||||||    
T  8903871 ttttcaacactctctctagtactcacttgtttatttgatgaaatcaatgtatgtcccaccactttgtgtcggttcaattttcaaagtgtagacccacaat 8903970  T
Q  167 ggtttaaaccaataaaagattaagtattagaaa 199  Q
    | ||||||||||||| ||| |||||| ||||||    
T  8903971 gatttaaaccaataagagagtaagtaatagaaa 8904003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 5979944 - 5980042
Alignment:
Q  112 aatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    |||||||||  ||| | ||||||||| ||| ||||| ||||||| ||||||||||||||| ||||||||| ||| | ||||||||| |  ||||||||||    
T  5979944 aatgtatgtcccaccactttgtgtgggttcaattttcaaagtgtgaactcacaatggttt-aaccaataagagagtgagtattagagagagtgttcaaaa 5980042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 7493427 - 7493362
Alignment:
Q  143 attttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttca 208  Q
    ||||| |||||||| |||||||||| ||||||||||||| ||| | |||||||||||  |||||||    
T  7493427 attttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtattagaaagagtgttca 7493362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 8914771 - 8914904
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  ||||||| | | || ||||||||||| ||| ||| |||| ||||||  |||||||||  ||| | ||||||||| |||  ||||    
T  8914771 gaatgctagcaacactcacttttgagcgctctctctaacactcactctttcattggataaaaccaatgtatgtcccaccactttgtgtgggttcattttt 8914870  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataa 181  Q
     |||||||| || ||||||| |||||||||||||    
T  8914871 caaagtgtagacccacaatgatttaaaccaataa 8914904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 43506538 - 43506684
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacactacttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttg 148  Q
    |||||||| |||||  ||||||| ||||||  ||||||||||   ||||||||| ||| ||| |||||||||  ||| | ||||||||| ||| | |||     
T  43506538 gaatgctagcaacactcacttttgaacact--ctctaacactcactttttattggatataatcaatgtatgttccaccactttgtgtgggttctactttc 43506635  T
Q  149 aaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    || ||||| || ||||||| ||||| ||||||| ||| | |||||||||    
T  43506636 aatgtgtagacccacaatgatttaagccaataagagagtgagtattaga 43506684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 13407479 - 13407396
Alignment:
Q  74 acactttctctaacacta-cttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgta 156  Q
    ||||| |||||||||||| ||||||||||| ||||||| |||||||||  ||| |||||  |||| ||| ||||| ||||||||    
T  13407479 acactctctctaacactaacttttttattggataaaatcaatgtatgtcccaccattttaagtgggttctattttcaaagtgta 13407396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 17499366 - 17499264
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatt 194  Q
    |||||||| || |||| ||| |||||  ||| ||||||||| | ||| ||||| |||||||| |  ||||||| ||||||||||||| ||| | ||||||    
T  17499366 ttttattggatgaaatcaatatatgtcccaccattttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataagagagtgagtatt 17499267  T
Q  195 aga 197  Q
    |||    
T  17499266 aga 17499264  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 4675001 - 4675077
Alignment:
Q  143 attttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgt 219  Q
    ||||| ||||||||  | ||||||| ||||||||||||||| | | | |||||||||  |||||||||||| |||||    
T  4675001 attttcaaagtgtagtcacacaatgatttaaaccaataaaaaaatgaatattagaaagagtgttcaaaatagagtgt 4675077  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 28490902 - 28490739
Alignment:
Q  49 gaatgctatcaacatccacttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgatttt 147  Q
    |||||||| |||||  |||||||||| ||| |||||| || | |||||||||||| || |||| || ||||||  ||| | |||||||   ||| |||||    
T  28490902 gaatgctagcaacagtcacttttcaaaactctctctagcattcacttttttattggatgaaatcaaagtatgtcccaccactttgtgtaagttcaatttt 28490803  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaa 211  Q
    ||||||||| || ||||||  ||||||||||||| ||| | ||||||||| |  ||||||||||    
T  28490802 gaaagtgtagacccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaa 28490739  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 25630824 - 25630938
Alignment:
Q  66 acttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcaca 164  Q
    ||||||||||||| ||| ||||| | ||| ||||||| |||||||||||||||| |  ||||||||||| | | ||| ||||| |||||||| || |||     
T  25630824 acttttcaacactctctttaacatttactattttatttaataaaattaatgtatatcccactattttgtataggttcaattttcaaagtgtagacccacg 25630923  T
Q  165 atggtttaaaccaat 179  Q
    ||| |||||||||||    
T  25630924 atgatttaaaccaat 25630938  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 34368379 - 34368493
Alignment:
Q  68 ttttcaacactttctctaacact-acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaat 166  Q
    |||| |||||||||||||||||| ||| ||| |||| ||||||  |||||||||  ||| | ||||||||| |||  |||| |||||||| || ||||||    
T  34368379 ttttgaacactttctctaacactcactctttcattggataaaaccaatgtatgttccaccactttgtgtgggttcatttttcaaagtgtagacccacaat 34368478  T
Q  167 ggtttaaaccaataa 181  Q
    | |||||||||||||    
T  34368479 gatttaaaccaataa 34368493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 28223955 - 28223807
Alignment:
Q  50 aatgctatcaacatccacttttcaacactttctctaacactactt-ttttattgaataaaattaatgtatgtatcacta-ttttgtgtggattcgatttt 147  Q
    ||||||| |||||  ||||||||||||||  || |||||||  || ||||||||||| |||||| ||||||| |||| | ||||||||||  || |||||    
T  28223955 aatgctagcaacactcacttttcaacactacctttaacacttattcttttattgaatgaaattattgtatgt-tcaccaattttgtgtgggctcaatttt 28223857  T
Q  148 gaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
     ||||| || || || |||| ||||||||||||||||| | |||||||||    
T  28223856 caaagtatagacccataatgatttaaaccaataaaagagtgagtattaga 28223807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 25919270 - 25919346
Alignment:
Q  107 aaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaa 183  Q
    |||| ||| ||||| |||| |||||||||||  || ||||| |||||||| |||||||||| |||||||||||||||    
T  25919270 aaatcaatatatgtctcaccattttgtgtgggatcaattttcaaagtgtagactcacaatgatttaaaccaataaaa 25919346  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 34384855 - 34384686
Alignment:
Q  65 cacttttcaacactttctctaacactactt-ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcac 163  Q
    ||||||| || ||||||| |||||||  || ||||||||  | |||| |||||||||  ||||||||||||||  ||| ||||| ||| | || ||||||    
T  34384855 cactttttaatactttctttaacactcattcttttattgggtgaaatcaatgtatgtcccactattttgtgtgagttcaattttcaaattatagactcac 34384756  T
Q  164 aatggtttaaaccaataaaagattaagtattagaaactgtgttcaaaatatagtgtcactagcattactt 233  Q
    |||| |||| ||| |||||||| | ||||||| | |  |||||||||| | ||||  |||| ||||||||    
T  34384755 aatgatttagaccgataaaagagtgagtattaaagagagtgttcaaaagagagtgctactaccattactt 34384686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 41330514 - 41330410
Alignment:
Q  107 aaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaactgtgtt 206  Q
    ||||||||||||||  ||  | ||||||| | ||| ||||| |||||||| |||||||||| ||||||||||||| | ||  ||||||| | | ||||||    
T  41330514 aaattaatgtatgtcccatcactttgtgtaggttcaattttcaaagtgtagactcacaatgatttaaaccaataagaaatgtagtattaaagagtgtgtt 41330415  T
Q  207 caaaa 211  Q
    |||||    
T  41330414 caaaa 41330410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 34480057 - 34479980
Alignment:
Q  122 tcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattagaaa 199  Q
    |||| |||||||||| |||| ||||| |||||| | || ||||||  |||||| | |||| |||||||||||||||||    
T  34480057 tcaccattttgtgtgaattcaatttttaaagtgcagacccacaataatttaaatcgataagagattaagtattagaaa 34479980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 37455405 - 37455497
Alignment:
Q  104 ataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtattaga 197  Q
    ||||||| |||||||||  ||| |||||||| || ||| ||||| |||||||| |||||||||  || |||||||||| ||| | |||||||||    
T  37455405 ataaaatcaatgtatgttccaccattttgtgggggttcaattttcaaagtgtagactcacaataatt-aaaccaataagagagtgagtattaga 37455497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 5413870 - 5413782
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaa 183  Q
    |||||||| || |||| |||||||||  ||| | ||||||||| ||| ||||  |||||||| || || |||| |||||||||||||||    
T  5413870 ttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcaatttacaaagtgtagacccataatgatttaaaccaataaaa 5413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 43064 - 42969
Alignment:
Q  91 acttttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggttt-aaaccaataaaaga 185  Q
    |||||||||||||||||||| ||| ||| |  ||| |||||||||   ||| ||||| ||||| |||||||| |||| ||| ||||||||||||||    
T  43064 acttttttattgaataaaatcaatatatctgccaccattttgtgtaagttcaattttaaaagtataaactcaaaatgatttaaaaccaataaaaga 42969  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 27859 - 27959
Alignment:
Q  95 ttttattgaataaaattaatgtatgtatcactattttgtgtggattcgattttgaaagtgtaaactcacaatggtttaaaccaataaaagattaagtatt 194  Q
    |||||||| ||  ||| |||||||||  ||| | ||||||||| ||| ||||  |||||||| || ||||||| ||||||||||||| ||| | ||||||    
T  27859 ttttattggatggaatcaatgtatgtcccaccactttgtgtgggttctatttccaaagtgtagacccacaatgatttaaaccaataagagagtgagtatt 27958  T
Q  195 a 195  Q
    |    
T  27959 a 27959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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