View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_99 (Length: 303)
Name: NF16091_low_99
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_99 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 16856394 - 16856122
Alignment:
| Q |
14 |
tgagaagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatggatgagctaaaatgtaacatctttttaacctttat |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856394 |
tgagcagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagagaaatatggatgagctaaaatgtaacatctttttaacctttat |
16856295 |
T |
|
| Q |
114 |
gtggaagaatgtaaacagacaaattcaattgtgatggt-taaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856294 |
gtggaagaatgtaaacagacaaattcaatggcgatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaat |
16856195 |
T |
|
| Q |
213 |
gaaggatgtaaaagttctgnnnnnnnnnnnaattaaaataataatgttcagttacatttggttaacattgatgt |
286 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856194 |
gaaggatgtaaaagttctg-ttttttttttaattaaaataataatgttcagttacatttggttaacattgatgt |
16856122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 47933517 - 47933782
Alignment:
| Q |
21 |
aaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933517 |
aaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaag |
47933616 |
T |
|
| Q |
121 |
aatgtaaacagacaaattcaattgtgatggt-taaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggat |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47933617 |
aatgtaaacagacaaattcaatggtgatggtgtaaatatta-aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaacgaaggat |
47933715 |
T |
|
| Q |
220 |
gtaaaagttctgnnnnnnnnnnnaattaaaataataatgttcagttacatttggttaacattgatgt |
286 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933716 |
gtaaaagttctgtttttttttttaattaaaataataatgttcagttacatttggttaacattgatgt |
47933782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 54946319 - 54946584
Alignment:
| Q |
21 |
aaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54946319 |
aaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaag |
54946418 |
T |
|
| Q |
121 |
aatgtaaacagacaaattcaattgtgatggt-taaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggat |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54946419 |
aatgtaaacagacaaattcaatggtgatggtgtaaatatta-aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaacgaaggat |
54946517 |
T |
|
| Q |
220 |
gtaaaagttctgnnnnnnnnnnnaattaaaataataatgttcagttacatttggttaacattgatgt |
286 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54946518 |
gtaaaagttctgtttttttttttaattaaaataataatgttcagttacatttggttaacattgatgt |
54946584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 5885303 - 5885520
Alignment:
| Q |
14 |
tgagaagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatggatgagctaaaatgtaacatctttttaacctttat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885303 |
tgagcagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacctttat |
5885402 |
T |
|
| Q |
114 |
gtggaagaatgtaaacagacaaattcaattgtgatggt-taaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885403 |
gtggaagaatgtaaacagacaaattcaatggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaat |
5885502 |
T |
|
| Q |
213 |
gaaggatgtaaaagttct |
230 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5885503 |
gaaggatgtaaaagttct |
5885520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 43 - 286
Target Start/End: Original strand, 11129 - 11373
Alignment:
| Q |
43 |
gttatcatataggtgaaagggaaaaaggaaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11129 |
gttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaat |
11228 |
T |
|
| Q |
143 |
tgtgatggt-taaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttctgnnnnnnnnnn |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11229 |
ggtgatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttctgtttttttttt |
11328 |
T |
|
| Q |
242 |
naattaaaataataatgttcagttacatttggttaacattgatgt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11329 |
taattaaaataataatgttcagttacatttggttaacattaatgt |
11373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 43942634 - 43942417
Alignment:
| Q |
14 |
tgagaagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatggatgagctaaaatgtaacatctttttaacctttat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43942634 |
tgagcagaaaaggaatgagatttgcgttggttatcatgtaggtgaaagggaaaaagggaaatatggatgatctaaaatgtaacatctttttaacctttat |
43942535 |
T |
|
| Q |
114 |
gtggaagaatgtaaacagacaaattcaattgtgatggt-taaatat--tataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43942534 |
atggaagaatgtaaacagacaaattcaatggtgatggtgtaaatattatataacaaataatcaatgtttttaaaaaatagtagttgaaggagttataaga |
43942435 |
T |
|
| Q |
211 |
atgaaggatgtaaaagtt |
228 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
43942434 |
atgaaggatgtaaaagtt |
43942417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 2501213 - 2501361
Alignment:
| Q |
14 |
tgagaagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatggatgagctaaaatgtaacatctttttaacctttat |
113 |
Q |
| |
|
|||| ||||||||||||||||| | || | |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
2501213 |
tgagcagaaaaggaatgagattagtgt-gattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaagctttat |
2501311 |
T |
|
| Q |
114 |
gtggaagaatgtaaacagacaaattcaattgtgatggt-taaatattata |
162 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
2501312 |
gtgaaagaatgtaaacagacacattcaatgatgatggtgtaaatattata |
2501361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 43942372 - 43942329
Alignment:
| Q |
243 |
aattaaaataataatgttcagttacatttggttaacattgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43942372 |
aattaaaataataatgttcagttacacttggttaacattgatgt |
43942329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 7610 - 7542
Alignment:
| Q |
162 |
aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttct |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7610 |
aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttct |
7542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 26231049 - 26231120
Alignment:
| Q |
80 |
atgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaattgtgatggt |
151 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||| || |||| ||||||| |
|
|
| T |
26231049 |
atgatctaaaatgtaacatctctttaagctttatgtggaagaatgtaaacatacacatccaatgatgatggt |
26231120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 26230959 - 26231004
Alignment:
| Q |
21 |
aaaaggaatgagatttgcgttggttatcatataggtgaaagggaaa |
66 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
26230959 |
aaaaggaatgagattagtgttggttattatataggtgaaagggaaa |
26231004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University