View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16092_high_1 (Length: 469)
Name: NF16092_high_1
Description: NF16092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16092_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 28421948 - 28421516
Alignment:
| Q |
1 |
ctgtttattactggatgatgctatgatttatgagtctagctagggactcttgggtgttgaattttattataatggtttcaaata--acacataaaggaga |
98 |
Q |
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| T |
28421948 |
ctgtttattactggatgatgctatgatttatgagtctagctagggactcttgggtgttgaattttattataatggtttcaaatataacacataaaggaga |
28421849 |
T |
|
| Q |
99 |
attctttaattgatgttctgaaatggatttgtcttcaagtgtttggatgatattagattcctatcaccccactattgaatatcttcagagaacgagatct |
198 |
Q |
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| T |
28421848 |
attctttaattgatgttctgaaatggatttgtcttcaagtgtttggatgatattagattcctatcaccccactattgaatatcttcagagaacgagatct |
28421749 |
T |
|
| Q |
199 |
ttcactcccttgtccttttccatttatactttgtgttgttccttttaagttttattattattacttttggtacacgtgatattgtatatgaaataataca |
298 |
Q |
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| T |
28421748 |
ttcactcccttgtccttttccatttatactttgtgttgttccttttaagttttattattattacttttggtacacgtgatattgtatatgaaataataca |
28421649 |
T |
|
| Q |
299 |
tcagagtcttaccattaggaatagcttgggcttgggtacttgttcctcttcctttgtttttcttcctttatgtcccttctttctacattttcctgcaggc |
398 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28421648 |
tcagagtcttaccattaggaatagct------tgggtacttgttcctcttcctttgtttttcttcctttatgtcccttctttctacattttcctgcaggc |
28421555 |
T |
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| Q |
399 |
atttcaaatcagtttgctaagttcacaaatatacatgta |
437 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
28421554 |
atttcaaatcaatttgctaagttcacaaatatacatgta |
28421516 |
T |
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