View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16092_high_1_N (Length: 461)
Name: NF16092_high_1_N
Description: NF16092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16092_high_1_N |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 23 - 430
Target Start/End: Complemental strand, 44017455 - 44017054
Alignment:
| Q |
23 |
acatcatcacaaggttggttttggctctatcatttagtagcagagacaaagatagttaaggtacattctggtatatgtctaagataacaaatagaaagct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44017455 |
acatcatcacaaggttggttttggctctatcatttagtagcagagacaaagatagttaaggtacattctggtatatgtctaagataacaaatagaaagct |
44017356 |
T |
|
| Q |
123 |
ttgtccattcctttttgaccattctctcatctctattatctcccttcttaaacatactacttgacactatctctttttgtttcacatgcttttgtttaaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44017355 |
ttgtccattcctttttgaccattctctcatctctattatctcccttcttaaacatactacttgacactatctctttttgtttcacatgcttgtgtttaaa |
44017256 |
T |
|
| Q |
223 |
acgtttgtgtgaaacttaagcatcatgcatgtgctctcctaaactagtagtcttttattaccttcaccttcaccttcaccctcatcttctacattaatct |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44017255 |
acgtttgtgtgaaacttaagcatcatgcatgtgctctcctaaactagtagtcttttatcaccttcacctt------caccctcatcttctacattaatct |
44017162 |
T |
|
| Q |
323 |
ccgactccaagtaaagccaccattttcacaatcaaaaatggaaaatattagtgttacctctttgttcttttgcttactcttttttagcataacaaagata |
422 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44017161 |
ccaactccaagtaaagtcaccattttcacaatcaaaaatggaaaatattagtgttacctctttgttcttttgcttactcttttttagcataacaaagata |
44017062 |
T |
|
| Q |
423 |
caagtaat |
430 |
Q |
| |
|
|||||||| |
|
|
| T |
44017061 |
caagtaat |
44017054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 31037093 - 31037218
Alignment:
| Q |
129 |
attcctttttgaccattctctc--atctctattatctcccttcttaaacatac---tacttgacactatctctttttgtttcacatgcttttgtttaaaa |
223 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||| ||| |||||||||| ||| ||||||||| |||||| ||| | |||||| || ||| |||| |
|
|
| T |
31037093 |
attcctttttgaacattctctctcagctctattttcttccttcttaaagataacaatacttgacaatatctcctttcatgtcacattctagtgtcgaaaa |
31037192 |
T |
|
| Q |
224 |
cgtttgtgtgaaacttaagcatcatg |
249 |
Q |
| |
|
| |||||||||||| ||||||||||| |
|
|
| T |
31037193 |
catttgtgtgaaacctaagcatcatg |
31037218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University