View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16092_high_3 (Length: 353)
Name: NF16092_high_3
Description: NF16092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16092_high_3 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0477 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 10068 - 9728
Alignment:
| Q |
12 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
10068 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaattt |
9970 |
T |
|
| Q |
112 |
gttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
211 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9969 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
9870 |
T |
|
| Q |
212 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9869 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
9770 |
T |
|
| Q |
312 |
cagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9769 |
cagtgctacgccttcaaccactcggccatctctcctacataa |
9728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 18181063 - 18180723
Alignment:
| Q |
12 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
18181063 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaattt |
18180965 |
T |
|
| Q |
112 |
gttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
211 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18180964 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
18180865 |
T |
|
| Q |
212 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18180864 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
18180765 |
T |
|
| Q |
312 |
cagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18180764 |
cagtgctacgccttcaaccactcggccatctctcctacataa |
18180723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 115 - 353
Target Start/End: Complemental strand, 37189616 - 37189381
Alignment:
| Q |
115 |
attccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37189616 |
attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt |
37189517 |
T |
|
| Q |
215 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189516 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagag---ttcgaaccctcggtaaacaaaaagcctacatagcagttccag |
37189420 |
T |
|
| Q |
315 |
tgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||| |
|
|
| T |
37189419 |
tactgcaccttcaaccactcggccatctctcctacataa |
37189381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 244912 - 244818
Alignment:
| Q |
259 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
244912 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccaatgctacgccttgaaccgctcggccatctttcctacataa |
244818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 207782 - 207817
Alignment:
| Q |
252 |
aagggtgcggaaagagagggattcgaaccctcggta |
287 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
207782 |
aagggagcggaaagagagggattcgaaccctcggta |
207817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 27029783 - 27029869
Alignment:
| Q |
271 |
gattcgaaccctcggtaaacaaaaa----gcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27029783 |
gattcgaaccctcggtaaaaaaaaaaaaagcttacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
27029869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 42790 - 42818
Alignment:
| Q |
259 |
cggaaagagagggattcgaaccctcggta |
287 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42790 |
cggaaagagagggattcgaaccctcggta |
42818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University