View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16092_high_4 (Length: 312)
Name: NF16092_high_4
Description: NF16092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16092_high_4 |
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| [»] chr3 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 40597477 - 40597779
Alignment:
| Q |
10 |
gaagaaaataaagatcattaaacttaaagaacagttttttaaacaaaatggtggcttactgttagaacaacaaatagtgaagcatggaggatcgtctgaa |
109 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
40597477 |
gaagaaaataaagatcattaaacttaaagaagagttttttaagcaaaacggtggcttactgttagaacaacaaatagtgaagcatggagggtcgtctaaa |
40597576 |
T |
|
| Q |
110 |
acacttaaaatcttcactattgaggagttaaatgaggcaaccaacaacttcgatgaaggcaagatcctaggccaaggtggccagggaacagtttacaaag |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
40597577 |
acacttaaaatcttcactattgaggagttaaatgaggcaaccagcaacttcaatgaaggcaaaatcctaggccaaggtggtcagggaacagtttacaaag |
40597676 |
T |
|
| Q |
210 |
gagttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatcgagtcgttcatcaatgaagtggtcgtgctttccca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
40597677 |
gagttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagattgagtcgttcatcaatgaagtggccgtgctttccca |
40597776 |
T |
|
| Q |
310 |
aat |
312 |
Q |
| |
|
||| |
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|
| T |
40597777 |
aat |
40597779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 40568089 - 40568391
Alignment:
| Q |
10 |
gaagaaaataaagatcattaaacttaaagaacagttttttaaacaaaatggtggcttactgttagaacaacaaatagtgaagcatggaggatcgtctgaa |
109 |
Q |
| |
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|||||||| |||| ||||| |||||||||||| |||||| ||||||| ||||||||||||||| ||||||| ||||| | ||||||||| || ||||| |
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| T |
40568089 |
gaagaaaagaaagctcattcgacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggcatggagggtcaactgaa |
40568188 |
T |
|
| Q |
110 |
acacttaaaatcttcactattgaggagttaaatgaggcaaccaacaacttcgatgaaggcaagatcctaggccaaggtggccagggaacagtttacaaag |
209 |
Q |
| |
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||| |||| | |||||| |||||||| ||||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
40568189 |
acagctaaagtgttcactgttgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggccaaggtggtcagggaactgtttacaaag |
40568288 |
T |
|
| Q |
210 |
gagttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatcgagtcgttcatcaatgaagtggtcgtgctttccca |
309 |
Q |
| |
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|||||||| || ||||||| |||||||||||||| ||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
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| T |
40568289 |
gagttttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgacccaaaccagattgagccgttcatcaatgaagtggtcgttctttccca |
40568388 |
T |
|
| Q |
310 |
aat |
312 |
Q |
| |
|
||| |
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|
| T |
40568389 |
aat |
40568391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 40579148 - 40579449
Alignment:
| Q |
11 |
aagaaaataaagatcattaaacttaaagaacagttttttaaacaaaatggtggcttactgttagaacaacaaatagtgaagcatggaggatcgtctgaaa |
110 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| ||| || ||||||||| || |||||| |
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| T |
40579148 |
aagaaaagaaagttcattaaacttaaagaacattttttccaacaaaatggtggcatactgttacaacaacagatatggaggcatggaggttcaactgaaa |
40579247 |
T |
|
| Q |
111 |
cacttaaaatcttcactattgaggagttaaatgaggcaaccaacaacttcgatgaaggcaagatcctaggccaaggtggccagggaacagtttacaaagg |
210 |
Q |
| |
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| |||| |||||| |||||||| |||| || ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
40579248 |
tagctaaagtcttcaaagttgaggagctaaaagatgcaaccaacaacttcgatgaaggcacgatcctaggccaaggtggtcagggaattgtttacaaagg |
40579347 |
T |
|
| Q |
211 |
agttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatcgagtcgttcatcaatgaagtggtcgtgctttcccaa |
310 |
Q |
| |
|
||||||| ||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
40579348 |
agttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattgagtcgttcatcaatgaagtggtcattctttcccaa |
40579447 |
T |
|
| Q |
311 |
at |
312 |
Q |
| |
|
|| |
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|
| T |
40579448 |
at |
40579449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 27 - 312
Target Start/End: Original strand, 40601662 - 40601947
Alignment:
| Q |
27 |
ttaaacttaaagaacagttttttaaacaaaatggtggcttactgttagaacaacaaatagtgaagcatggaggatcgtctgaaacacttaaaatcttcac |
126 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||| ||||||||| |||||||||||| |||||||||||||| | | ||||| |||| ||||||| |
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|
| T |
40601662 |
ttaaacttaaagaacatttttttcaacaaaacggtggtttactgttacaacaacaaatagcaaagcatggaggatcagccggaacacctaaagtcttcac |
40601761 |
T |
|
| Q |
127 |
tattgaggagttaaatgaggcaaccaacaacttcgatgaaggcaagatcctaggccaaggtggccagggaacagtttacaaaggagttttagaagataaa |
226 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
40601762 |
tattgaggagctaaataaagcaaccaacaacttcaatgaaagcaggatcctaggccaaggtggtcagggaacagtttacaaaggagttttacaagataac |
40601861 |
T |
|
| Q |
227 |
agtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatcgagtcgttcatcaatgaagtggtcgtgctttcccaaat |
312 |
Q |
| |
|
|| ||||| |||||||| ||||| | ||||||||||| ||||||||| ||| ||||||||||||||||| || | ||||| ||||| |
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| T |
40601862 |
agaattgtcgcaataaaaaagtccacaatcagtgaccaaaaccagattgagccgttcatcaatgaagtgatcattctttctcaaat |
40601947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 40572691 - 40572992
Alignment:
| Q |
11 |
aagaaaataaagatcattaaacttaaagaacagttttttaaacaaaatggtggcttactgttagaacaacaaatagtgaagcatggaggatcgtctgaaa |
110 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||| |||| || ||| ||||| || |||||| |
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|
| T |
40572691 |
aagaaaagaaagttcattaaacttcaagaacatttttttcaacaaaatggtggcttactgttacaacaacagatagggaggcacggaggttcaactgaaa |
40572790 |
T |
|
| Q |
111 |
cacttaaaatcttcactattgaggagttaaatgaggcaaccaacaacttcgatgaaggcaagatcctaggccaaggtggccagggaacagtttacaaagg |
210 |
Q |
| |
|
| |||| |||||| |||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||| |
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|
| T |
40572791 |
tagctaaagtcttcaaagttgaggagctaaaagaagcaaccaacaacttcgatcaaggcaagatcctaggccaaggtggtcaaggaattgtttacaaagg |
40572890 |
T |
|
| Q |
211 |
agttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatcgagtcgttcatcaatgaagtggtcgtgctttcccaa |
310 |
Q |
| |
|
||||||| || |||| || |||||||||||||| ||||| ||||| |||||||| |||||| | |||||||||||||||||||||||||| ||||||||| |
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|
| T |
40572891 |
agttttacaaaataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccaggttgagtcgttcatcaatgaagtggtcgtactttcccaa |
40572990 |
T |
|
| Q |
311 |
at |
312 |
Q |
| |
|
|| |
|
|
| T |
40572991 |
at |
40572992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 40591013 - 40591297
Alignment:
| Q |
28 |
taaacttaaagaacagttttttaaacaaaatggtggcttactgttagaacaacaaatagtgaagcatggaggatcgtctgaaacacttaaaatcttcact |
127 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||||| | |||| | ||||| | | || | ||||||| | | | |||||| |
|
|
| T |
40591013 |
taaacttaaagaacaattttttcaacaaaatggtggcttactgttgcaacaaaagataggaaggcatgaaaggtcaaccgaaacacccagagtgttcact |
40591112 |
T |
|
| Q |
128 |
attgaggagttaaatgaggcaaccaacaacttcgatgaaggcaagatcctaggccaaggtggccagggaacagtttacaaaggagttttagaagataaaa |
227 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| || |||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40591113 |
attgaggagctaaatgaagcaactaacaattttgatgaaggaaagattctaggcaaaggttctcagggaacagtttacaaaggagttttacaagataaaa |
40591212 |
T |
|
| Q |
228 |
gtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatcgagtcgttcatcaatgaagtggtcgtgctttcccaaat |
312 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||| ||||||||| ||| | |||||||||||||||||||| ||||| ||||| |
|
|
| T |
40591213 |
gtattgtagcaataaaaaagtccaaaatcaatgaccaaaaccagattgagccattcatcaatgaagtggtcgttctttctcaaat |
40591297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 2015646 - 2015345
Alignment:
| Q |
11 |
aagaaaataaagatcattaaacttaaagaacagttttttaaacaaaatggtggcttactgttagaacaacaaatagtgaagcatggaggatcgtctgaaa |
110 |
Q |
| |
|
||||||| |||| |||||||||| |||||||| |||||| ||||||||||||||||||| || ||||| || |||||| ||| ||||| || |||||| |
|
|
| T |
2015646 |
aagaaaagaaagctcattaaactgaaagaacaattttttcaacaaaatggtggcttactactacaacaagaagtagtgaggcacggagggtcaactgaaa |
2015547 |
T |
|
| Q |
111 |
cacttaaaatcttcactattgaggagttaaatgaggcaaccaacaacttcgatgaaggcaagatcctaggccaaggtggccagggaacagtttacaaagg |
210 |
Q |
| |
|
|| |||| |||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||| |
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|
| T |
2015546 |
caactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaagg |
2015447 |
T |
|
| Q |
211 |
agttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatcgagtcgttcatcaatgaagtggtcgtgctttcccaa |
310 |
Q |
| |
|
||||||| |||||||||| |||||||| || |||||||| |||||||||||||| |||||||| ||| ||||||||||||||||| | |||||||| ||| |
|
|
| T |
2015446 |
agttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagattgagccgttcatcaatgaagtgattgtgctttcacaa |
2015347 |
T |
|
| Q |
311 |
at |
312 |
Q |
| |
|
|| |
|
|
| T |
2015346 |
at |
2015345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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