View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_high_1 (Length: 810)
Name: NF16093_high_1
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 16 - 797
Target Start/End: Complemental strand, 1156514 - 1155735
Alignment:
| Q |
16 |
ttaactactttaaatgaagacaagtatttgatttccaaagaagcaaaaaacaggcttctcgaactacgtatgttgcaatattattgttattatcagtgtg |
115 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| || ||||||||| |
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| T |
1156514 |
ttaactactttaaatgaagacaagtattttacttccaaagaagcaaagaacaggcttcttgaactacgtcttttgcaatattattgtcatcatcagtgtg |
1156415 |
T |
|
| Q |
116 |
atccttctgatgacagaattattcatgttcaactttacaaaagtgatgaagattggagtggtgggggaactttttcaaaaatggaactagttacagatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1156414 |
atccttctgatgacagaattattcatgttcaactttacaaaagtgatgaagattggagtggtggggtaactttttcaaaaatggaactagttacagatga |
1156315 |
T |
|
| Q |
216 |
cgattatgtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1156314 |
agattatgtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttc |
1156215 |
T |
|
| Q |
316 |
aaaactcctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaaaatataagagagttagaactatatagatttatcaccttctct |
415 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |
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| T |
1156214 |
aaaactcctcttgatgatttggaggaaaaagttgtcactattggcaccgaagaggt-aaatataagagagttaaaactatatagatttatcaccttcact |
1156116 |
T |
|
| Q |
416 |
gttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgtttatgcagagttacagcatattgaa |
515 |
Q |
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| T |
1156115 |
gttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgtttgtgcagagttacagcatattgaa |
1156016 |
T |
|
| Q |
516 |
ggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaggcatgaggaatgggaaccattaactttatgttgt |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1156015 |
ggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaagcatgaggaatgggaaccattaactttatgttgt |
1155916 |
T |
|
| Q |
616 |
ttgtttaagagatgttaatagccttagaggaagcttgtaatgaaaaacatttctagactactattttgttattgttatatcatttttggcactaccgttt |
715 |
Q |
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| T |
1155915 |
ttgtataagatatgtt-agagccttagaggaagcttgtaatgaaaaacatttctagattactattttgttattgttatatcatttttggcactaccgttt |
1155817 |
T |
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| Q |
716 |
taagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgtatattct |
797 |
Q |
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| T |
1155816 |
taagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgtattttct |
1155735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 222 - 373
Target Start/End: Complemental strand, 23250582 - 23250431
Alignment:
| Q |
222 |
tgtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaact |
321 |
Q |
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|||||| ||| || |||||||| ||||||||||||||||| || ||||||| | |||||||||| |||||||| || || | | | | ||||||||||| |
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| T |
23250582 |
tgtcaagagaccagaaatgtatgtggttacggatgatctgatcgtagaacccttgttgtctccagtttcatctatacatgtacttcaacgtttcaaaaca |
23250483 |
T |
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| Q |
322 |
cctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaa |
373 |
Q |
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||| ||||||| |||||||||||||||||||| || |||| | ||||||||| |
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| T |
23250482 |
cctattgatgatttggaggaaaaagttgtcaccatcggcatcaaagaggtaa |
23250431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 494 - 569
Target Start/End: Complemental strand, 23284329 - 23284254
Alignment:
| Q |
494 |
tgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
569 |
Q |
| |
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|||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
23284329 |
tgcagagtcacaacatattcaaggcagctttaagctcaacgcctgctctaacgaatggtctccgtcacttgttaac |
23284254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 23284551 - 23284414
Alignment:
| Q |
236 |
aaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactcctcttgatgactt |
335 |
Q |
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|||||||| ||||||||||||||||| | ||||||| | | |||||||| |||||||| ||||| | | | | |||||||||| ||| ||||| | || |
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| T |
23284551 |
aaatgtatgtggttacggatgatctgattgtagaaccgttgatgtctccagtttcatctatatatgtacttcaacgtttcaaaatacctattgataattt |
23284452 |
T |
|
| Q |
336 |
ggaggaaaaagttgtcactattggcaccgaagaggtaa |
373 |
Q |
| |
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|||||||||||||||||| ||||||| | ||||||||| |
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| T |
23284451 |
ggaggaaaaagttgtcaccattggcatcaaagaggtaa |
23284414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 569
Target Start/End: Complemental strand, 23250179 - 23250084
Alignment:
| Q |
474 |
atttcacactgttatgtttatgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
569 |
Q |
| |
|
|||||||| |||| |||| | |||||| || |||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
23250179 |
atttcacattgttgtgttggttcagagtcgcaacatatttaaggctgctttatgctcaacgtctgctctaacgaatggtctccgtcacttgttaac |
23250084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 223 - 373
Target Start/End: Complemental strand, 23283191 - 23283041
Alignment:
| Q |
223 |
gtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactc |
322 |
Q |
| |
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||||| ||| || |||||||| | ||||||||||||||| || ||| ||| | |||||||| || ||||||| |||| | | | | ||||||||||| | |
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| T |
23283191 |
gtcaagagaccagaaatgtatgtagttacggatgatctgatcctagtaccattgttgtctcgaacttcatctatatacgtacttcaacgtttcaaaacac |
23283092 |
T |
|
| Q |
323 |
ctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaa |
373 |
Q |
| |
|
|| || |||| |||||| |||||||| |||| ||||||| ||||||||||| |
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| T |
23283091 |
ctattaatgatttggagaaaaaagttctcaccattggcatcgaagaggtaa |
23283041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 23321571 - 23321509
Alignment:
| Q |
508 |
atattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacc |
570 |
Q |
| |
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|||||||| || ||||||| |||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
23321571 |
atattgaaagctgctttaacctcaacatctgctctaacaaatggtctcagtcacttgttaacc |
23321509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 22632764 - 22632706
Alignment:
| Q |
316 |
aaaactcctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaaa |
374 |
Q |
| |
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|||||||||||| |||| ||| |||||||||||||||| ||||||||| | |||||||| |
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|
| T |
22632764 |
aaaactcctcttaatgatttgaaggaaaaagttgtcaccattggcaccaaggaggtaaa |
22632706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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