View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_high_11 (Length: 319)
Name: NF16093_high_11
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 69 - 290
Target Start/End: Complemental strand, 15007803 - 15007574
Alignment:
| Q |
69 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaact---tcacatgatttgaattatgaggcataactaaaagacaattatag |
165 |
Q |
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| T |
15007803 |
gaagtaatgtgaatcaatattaccttaagttcatgcgaaaatttatttgaactaattcacatgatttgaattatgaggcctaactaaaagacaattatag |
15007704 |
T |
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| Q |
166 |
aaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatc-----tgttataataccagctgctatatattgttc |
260 |
Q |
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| T |
15007703 |
aaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttcaatgttataataccagctgctatatattgttc |
15007604 |
T |
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| Q |
261 |
acatctttcgataataatagggctaatgtg |
290 |
Q |
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| T |
15007603 |
acttctttcgataataataaggctaatgtg |
15007574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 69 - 296
Target Start/End: Complemental strand, 40787412 - 40787192
Alignment:
| Q |
69 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaacttcacatgatttgaattatgaggcataactaaaagacaattatagaaa |
168 |
Q |
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| T |
40787412 |
gaagtaatgagaatcaatattacctcaagatcatgcgaaaatttatttaaacttcacatgatttgaattatgaggcataactaaatga----------aa |
40787323 |
T |
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| Q |
169 |
attgtatgatgagagccataagtattatatgatataggttggattcaattttatataata---tctgttataataccagctgctatatattgttcacatc |
265 |
Q |
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| T |
40787322 |
attgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttctgttataataccagctgctatatattgttcacatc |
40787223 |
T |
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| Q |
266 |
tttcgataataatagggctaatgtgtccctc |
296 |
Q |
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| T |
40787222 |
tttcgataataaaaaggctaatgtgtccctc |
40787192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 52311122 - 52311151
Alignment:
| Q |
69 |
gaagtaacgagaatcaatattacctcaagt |
98 |
Q |
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| T |
52311122 |
gaagtaacgagaatcaatattacctcaagt |
52311151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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