View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16093_high_13 (Length: 312)
Name: NF16093_high_13
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 83 - 264
Target Start/End: Original strand, 28928269 - 28928449
Alignment:
| Q |
83 |
tgtactacaatgcataaacttttgacagttgttaaatgtgtagtttttaattgaagaatgtcaaggtcccag-actcata----tatagcataagaaatg |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
28928269 |
tgtactacaatgcataaacttttgacagttgttaaatgt--agtttttaattgaagaatatcaaggtcccactactcatacatatatagcataagaaatg |
28928366 |
T |
|
| Q |
178 |
gtagaagtgaaaaggtagtacataaatgaactcatatatacaaacatggtttatttatttatttaagaatcgtatacaatttgtttg |
264 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
28928367 |
gtagaagtgaaaagatagtacataaatgaactcatatatacaaacatgg----tttatttatttaagaatcgtatataatttgtttg |
28928449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 28928204 - 28928242
Alignment:
| Q |
18 |
aatatgtgcagagtcatatggatcaatatgttacttggt |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28928204 |
aatatgtgcagagtcatatggatcaatatgttacttggt |
28928242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University