View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_high_3 (Length: 572)
Name: NF16093_high_3
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 31003075 - 31003619
Alignment:
| Q |
18 |
ttatcagtgacattttttcttgaaggttatcgataccaccagagtctagtggaagtggttagtgtgcaatttgtgtcagtgttgtcaaccacatgatacc |
117 |
Q |
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| T |
31003075 |
ttatcagtgacattttttcttgaaggttatcgataccaccagagtctagtggaagtggttagtgtgcagtttgtgtcagtgttgtcaaccacatgatacc |
31003174 |
T |
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| Q |
118 |
gatttcgatacttactgataattgttttttaaggtcattgatgtgtcgagtagctttggttcagttacataaataagcaatgaattaatggagtgaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31003175 |
gatttcgatacttactgataattgttttttaaggtcattgatgtgtcgtgtagctttggttcagttacataaataagcaatgaattaatggagtgaagaa |
31003274 |
T |
|
| Q |
218 |
tattgtaattgtttgtaaaaacgtatttagatgagtaacattgtaaaatgttgtaaaactgtgactgaaatgctctttgaaggatgaatttgtactttac |
317 |
Q |
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| T |
31003275 |
tattgtaattgtttgtaaaaacgtatttagatgagtaacattgtaaaatgttgtaaaactgtgactgaaatgctctttgaaggatgaatttgtactttac |
31003374 |
T |
|
| Q |
318 |
attcagcaatttgatcatatcagcaaaagtgcagtatatatttagcattatgagcattttcttatcaatctttagtagaatcatatagttgcataattgg |
417 |
Q |
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| T |
31003375 |
attcagcaatttgatcatatcagcaaaagtgcagtatatatgtagcattatgagcattttcttatcaatgtttagtagaagcatatagttgcataattgg |
31003474 |
T |
|
| Q |
418 |
tgaagataatgctttgaatggcacagactttgttaatggtacaagggagataccacttacgcgtcacttaaacatgctcaacggacgaagctatgcattt |
517 |
Q |
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| T |
31003475 |
tgaagataatgctttgaatggcacagactttgttaatggtacaagggagataccacttacgcgtcacttaaacatgctcaacggacgaagctatgcattt |
31003574 |
T |
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| Q |
518 |
tcaaagtcatatcttaaacgagttatgtgcataaacactagaatt |
562 |
Q |
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| T |
31003575 |
tcgaagtcatatcttaaacgagttatgtgcataaacactagaatt |
31003619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 156 - 397
Target Start/End: Original strand, 31000057 - 31000294
Alignment:
| Q |
156 |
tgatgtgtcgagtagctttggttcagttacataaataagcaatgaattaatggagtgaagaatattgtaattgtttgtaaaaacgtatttagatgagtaa |
255 |
Q |
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|||||| | |||||| |||||||| |||||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||| || ||||||||| ||||| |
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| T |
31000057 |
tgatgtattgagtagatttggttccgttacacaaaaaagaaatgaactaatggagtgaaggatattgtaattgtttgtaagaatgtatttagacaagtaa |
31000156 |
T |
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| Q |
256 |
cattgtaaaatgttgtaaaactgtgactgaaatgctctttgaaggatgaatttgtact-ttacattcagcaatttgatcatatcagcaaaagtgcagtat |
354 |
Q |
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| T |
31000157 |
ctttgtaaaatgtcataaaactgtgactgaaatgctctttgatggatggatttgtactcttacatt----aaattgatcatatcagc-aaagtgcactat |
31000251 |
T |
|
| Q |
355 |
atatttagcattatgagcattttcttatcaatctttagtagaa |
397 |
Q |
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| T |
31000252 |
atatgtaacattatgagtattttcttatcaatgtttaatagaa |
31000294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 183 - 345
Target Start/End: Original strand, 30993042 - 30993205
Alignment:
| Q |
183 |
tacataaataagcaatgaattaatggagtgaagaatattgtaattgtttgtaaaaacgtatttagatgagtaacattgtaaaatgttgtaaaactgtgac |
282 |
Q |
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|||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
30993042 |
tacacaaaaaagaaatgaactaatggagtgaaggatattgtaattgtttgtaagaatgtatttagacaagtaacattgtaaaatgtcataaaactgtgac |
30993141 |
T |
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| Q |
283 |
tgaaatgctctttgaaggatgaatttgtact-ttacattcagcaatttgatcatatcagcaaaa |
345 |
Q |
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| T |
30993142 |
tgaaatgctctttgatggatgaatttgtactcatacattcagcaaattgatcatatcagaaaaa |
30993205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 30994883 - 30994951
Alignment:
| Q |
160 |
gtgtcgagtagctttggttcagttacataaataagcaatgaattaatggagtgaagaatattgtaattg |
228 |
Q |
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| T |
30994883 |
gtgttgagtaggtttggtttagttacacaaataagcaatgcaataatggaatgaagggtattgtaattg |
30994951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 30992940 - 30992976
Alignment:
| Q |
18 |
ttatcagtgacattttttcttgaaggttatcgatacc |
54 |
Q |
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||||||||||||||| |||||||||||||| |||||| |
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| T |
30992940 |
ttatcagtgacatttcttcttgaaggttattgatacc |
30992976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 30993261 - 30993297
Alignment:
| Q |
400 |
atatagttgcataattggtgaagataatgctttgaat |
436 |
Q |
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|||||||||||||||| | |||||||||||||||||| |
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| T |
30993261 |
atatagttgcataattcgcgaagataatgctttgaat |
30993297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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