View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_high_4 (Length: 549)
Name: NF16093_high_4
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 45102717 - 45102196
Alignment:
| Q |
16 |
gtacatgttctacttatgtatacaaaattgtatatgatgcaggccataaggttttttatgagttctaacttgactgtgaaaggacttaaggtgaagaaca |
115 |
Q |
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| T |
45102717 |
gtacatgttctacttatgtatacaaaattgtatatgatgcaggccataaggttttttatgagttctaacttgactgtgaaaggacttaaggtgaagaaca |
45102618 |
T |
|
| Q |
116 |
gccctcagttcaatttcagatttgatgcctgcaataatgtccatatagaatcaatttatatcacagctccaaaaataagccccaacaccgatgggataca |
215 |
Q |
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| T |
45102617 |
gccctcagttcaatttcagatttgatgcctgcaataatgtccatatagaatcaatttatatcacagctccaaaaataagccccaacaccgatgggattca |
45102518 |
T |
|
| Q |
216 |
cttagaatatgccaatgatgtgaaaatatataattctgtgatttccaatggttagttgccaaaatatttgttttgcagtatccttgtttattgcatcaaa |
315 |
Q |
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| T |
45102517 |
cttagaatatgccaatgatgtgaaaatatataattctgtgatttccaatggttagttgccaaaatatttgttttgcagtatccttgtttattgcattaaa |
45102418 |
T |
|
| Q |
316 |
aacattaacaaaacatggcggatttatctttcataggtgatgactgtgtgtccattggaaccgggagctatgatgttgatataaagaacattacttgtgg |
415 |
Q |
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| T |
45102417 |
aacattaacaatacatggcggatttatctttcataggtgatgactgtgtgtccattggaaccgggagctatgatgttgatataaagaacattacttgtgg |
45102318 |
T |
|
| Q |
416 |
acctagtcatggaattaggtaacctatattatttgcttca-ttcatatgccnnnnnnnncttcttcttcttcatacggatcctaaggaaaatgcgtcatg |
514 |
Q |
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| T |
45102317 |
acctagtcatggaattaggtaacctatattatttgctttatttcatatgccttttttttcttcttcttcttaatacggatcctaagaaaaatgcatcatg |
45102218 |
T |
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| Q |
515 |
ataatccaaagttcggttgaga |
536 |
Q |
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| T |
45102217 |
ataatccaaagttcggtcgaga |
45102196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 53 - 271
Target Start/End: Original strand, 38661473 - 38661691
Alignment:
| Q |
53 |
tgcaggccataaggttttttatgagttctaacttgactgtgaaaggacttaaggtgaagaacagccctcagttcaatttcagatttgatgcctgcaataa |
152 |
Q |
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| T |
38661473 |
tgcaggctataaggttttttatgagttcaaatttgactgtacaaggacttaggataaaaaacagtcctcaattccatttcagatttgatggctgccaaag |
38661572 |
T |
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| Q |
153 |
tgtccatatagaatcaatttatatcacagctccaaaaataagccccaacaccgatgggatacacttagaatatgccaatgatgtgaaaatatataattct |
252 |
Q |
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| T |
38661573 |
tgtgcatgtggaatcaattttcataacagctccagcacttagccccaacactgatggaatacacatagaaaataccaatgatgtgaaaatatataattcc |
38661672 |
T |
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| Q |
253 |
gtgatttccaatggttagt |
271 |
Q |
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|| ||||||||||||||| |
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| T |
38661673 |
gtagtttccaatggttagt |
38661691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 38661774 - 38661868
Alignment:
| Q |
343 |
ctttcataggtgatgactgtgtgtccattggaaccgggagctatgatgttgatataaagaacattacttgtggacctagtcatggaattaggtaa |
437 |
Q |
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|||| ||||||||||||||||| |||||||| | || ||||||||||||||||||| || || || |||||||| ||||||| ||||||||| |
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| T |
38661774 |
cttttataggtgatgactgtgtttccattgggtctggttgctatgatgttgatataaaaaatatcacatgtggaccaggtcatggcattaggtaa |
38661868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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