View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_high_6 (Length: 442)
Name: NF16093_high_6
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Complemental strand, 1865013 - 1864606
Alignment:
| Q |
14 |
attatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865013 |
attatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgata |
1864914 |
T |
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| Q |
114 |
ctgaaatccggtagatgtaggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgt |
213 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1864913 |
ctgaaatccgatagatgtaggaaatgatgaaacttttatttgttccgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgt |
1864814 |
T |
|
| Q |
214 |
tgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagcttttgccaaactaaaaagacgagaaggaaaaagaagctta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1864813 |
tgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagcttttgccaaactaaaaagacgagaaggaaaaagaaactta |
1864714 |
T |
|
| Q |
314 |
ataaaacaattgcggtttttattataacaaaaatgtaaaaatcgttgggatggatatacattgaaagtctataaattaaattatcaattgcaacttatgt |
413 |
Q |
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| T |
1864713 |
ataaaactattgcggtttttattataacaaaaatgtaaaaatcgttgggatggatatacattgaaagtctataaattaaattatcaattgcaacttgtgt |
1864614 |
T |
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| Q |
414 |
gtgtgtgt |
421 |
Q |
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| T |
1864613 |
gtgtgtgt |
1864606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 51575688 - 51575962
Alignment:
| Q |
16 |
tatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatact |
115 |
Q |
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| T |
51575688 |
tatattagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatggaacaacatgatgat |
51575787 |
T |
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| Q |
116 |
gaaatccggtagatgtaggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttg |
215 |
Q |
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| T |
51575788 |
gaaatccattagagataggtagagatgcaactatggtttgttccgagaccgttaattgcctttgattctccagcaatgcattgtattgttcaatttgttg |
51575887 |
T |
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| Q |
216 |
cttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagcttttgccaaactaaaaa |
290 |
Q |
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| T |
51575888 |
atacaaggccaatcttgtataataatctttgaagaacgcatcattttctgctttaagcctatgccaaactaaaaa |
51575962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 160 - 290
Target Start/End: Original strand, 35441487 - 35441617
Alignment:
| Q |
160 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
259 |
Q |
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||||||||||||| |||| ||| ||||||||| ||||| | || |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
35441487 |
gagtccattaattctttttgtttttccaacaattcattgaatttctctatttgttgcttcaacgccaatcttgtataataagctttgaagaactcaggat |
35441586 |
T |
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| Q |
260 |
tttcttctttaagcttttgccaaactaaaaa |
290 |
Q |
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| T |
35441587 |
tttgttcattaagcttttgccaaactgaaaa |
35441617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 35449928 - 35450081
Alignment:
| Q |
160 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
259 |
Q |
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||||| ||||||| ||||| ||||| || ||| ||||||| | || ||||| | |||||||||||||||||| || |||||||| |||||||| |||| |
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| T |
35449928 |
gagtctattaattccttttgtttatgcattaatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggat |
35450027 |
T |
|
| Q |
260 |
tttcttctttaagcttttgccaaactaaaaagacgagaaggaaaaagaagctta |
313 |
Q |
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||| ||||| |||| ||||||||||| |||||| || |||||||||| |||| |
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| T |
35450028 |
tttgttcttcaagcctttgccaaactgaaaagatgaaggggaaaaagaaactta |
35450081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 7239152 - 7239227
Alignment:
| Q |
202 |
tgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagctttt |
277 |
Q |
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||||||||||| ||||||||| ||| |||||| |||||||||| ||||| |||| ||| | ||||| |||||||| |
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| T |
7239152 |
tgttcaatttgctgcttcaacaccactcttgtataataagctttgaagaattcagcattatgttcttcaagctttt |
7239227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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